Hcos030292.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000654.1:262424-284159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1 1.1e+02 4.8 0.3 1 23 219 241 219 241 0.95 2 13 2.2 2.2e+02 3.8 0.8 1 23 333 357 333 357 0.84 3 13 0.029 3 9.7 0.4 3 20 396 413 394 415 0.92 4 13 4.5 4.6e+02 2.8 1.1 2 23 421 442 420 442 0.93 5 13 0.57 58 5.6 2.0 1 23 891 913 891 913 0.95 6 13 6.7 6.9e+02 2.3 1.5 1 23 962 983 962 983 0.76 7 13 0.0083 0.85 11.4 0.4 2 23 1035 1056 1034 1056 0.94 8 13 0.0092 0.94 11.3 3.6 2 23 1072 1093 1071 1093 0.96 9 13 3.2e-06 0.00033 22.2 2.4 1 23 1099 1121 1099 1121 0.98 10 13 6.6e-05 0.0067 18.0 1.1 1 23 1126 1148 1126 1148 0.98 11 13 0.036 3.7 9.4 3.2 2 23 1156 1180 1155 1180 0.96 12 13 0.34 35 6.3 0.5 1 19 1187 1205 1187 1206 0.83 13 13 0.0043 0.44 12.3 0.6 3 23 1219 1240 1218 1240 0.96
Sequence Information
- Coding Sequence
- ATGTCGGATTCAAATAAACGAAGAGCTAGAAAGTCAAAGTTAGTGCCACGTGATTATGTGGATGTGGACATCGAAGATgagaaaagtaacaaaatgcAGGAATCTCCAGAGATAATGCCGAAGATCTTCATAAAGTCACTCGACAAGCTCACCGCACCAGCCTCACCTAGCACCGAAGATTCGTCAATTCAGTTCAATGTGCAAGTGGAAGTGGAATCATGCGAGGACGGAGACAACCTTGTAATAGATGAATCCTACTTCAACGATATGACGGaccaaaatgatgatgatacagacTGGGCTATTGGAGAAGCAACGGAACCTAATCAAAAAGATATTTCAATAGCCGATAATGATGAAGAATCACTGTCCGAATACATGAAGTTTCTATCAGCTCGGTCGACGGCTACTCCCGTGCAGCACGTGTCTACCACAACGAAACTGACTACAGAGGAAATCTTAAACGAAGTAGATAGTATATTGAATAACTCACATAATGTAGCCGATCAAATACTAAGCATTGAGGTTAAGAATATCTGGGGACGTTTACAGCATACACCGAATAAACAAGATGAGCACGAGGTTATGATTCAAGAAGTTCTGGATTCGTGGATGAAGTGGTTTCATTCGAAATTGAACGATCCACCTCTGTTCTACAAATGTTACGTATGTGAAAAGGCTTGGTGGGATTTGTATGACTTTAGAGAGCATATCAGGAACCATAGAAATTTGAACGTTGATATTGAGGCATTCGGTGAGCAATGCTGTATTGGAGCATATGAAGAAAAGCCCGATGAGAATAAGCAGTTTCCCATAGACTCCGATTGCTGGAGATGTGGCAAAGACTTCGATAGTCATATGAAGCCTTATTATGAATGCGGTGGTTGTATGCTGCATTTCAATTCTTGTATAATGCTAGCGGAGCACGAAGGCTCTTGCGTTTCTTACTGGTATGAAAATAACTATGACAATCGTGATAAACAAGATATAGATGTACACCAGTGTCCGTTATGTGCAAGAAGACTGTTTTCCAACTACGCTTTGATGATGAAGCATATGCTTGCATACCATTCAGTCCGTTCTGATAGATGTACGTTCGTTAAAACGACGACTTGTGTTAAATGTGacggtaaatatataaattatttcactCATTACTGTAGATCGAAGCATGGAacaattttctgtaaaaattgtgATCGGAGATTCTCATCTAAAATTCTATTTGATATACATCAAAGTTTAAATAAGAAAGCGGTTAAGTGTAAAGTTTGTGATCTGACATTGGAGACGCAGTGTAAGGAAGTGGAGCATATGTTAACGCACACTGAGGACTTCATTGTAGCGTTTAGATGCAGGATATGTTGCGAGAAGAATTCAACGAACATGTTGATTCTGAAACGTAAAATTCATGACATCGtagaacattttaaacagtGTCACAAGTCGAAACGATTTGACAATAGGCTACGGGATTATGATTcgGTGATTATTCCTACGAAATTAACGCAAGTAAAACAACGTCCAGGAATTCTCGAAGATTCCACTTCATCAGGATCAGTAAGGGAGAGAGAAACCAACAAACGCAGGACCACAAAACGAGCAGCAAGTAAACCatctattataagGAAAAATACTAAAAGCCGCGTTAGATCATCTAGAATAATTCCAAATGATAATGGTACAGTACTATCAACACGTTTAAAGAACAATGTAACAAAAAATTTAGTAAAATACACtgctatatataaaacaaatgaaGATGTAAACGAGAAACAGAATAATTTCGACAGCAGAAGCAGAttcagaaaatatttttcaaatttcaatgAAAATGATGAAAGTAACATAGAGAATGACGACGTTAGAATCGAAGTATTTAAACACACAACAtcaaataattctaataatGAAAATACCAAATGCACAAATGATATAAATGCACCAACAAGTAGTAGAGATATAgtaataaaacaagaaataaatgCAATTGATGACAATGCTATTGATCGTAATCAAGATGATGTTACAATTGAAGAATCTCAAGTAAATATTGGAATAAAATCAGAAACAGATTCAGATAATGCCAACcaaactgaacttttaaatacaAATGATGATTTTAGTACAGATAACCTTGATagtgatattaaaattaaagatgaAGTGTTAGACGATGAACAGGATCCAGTGAATTATGATATAACTATAGAAGAAACGGATATTTCACTGTCAAAAGTGTTCAGAGTTTCAGATAGATTGAAAGAATTGACaagtaaaatattagtaaagGAAGAATTAATTGAAGATAAAGAAGATAATTCTAAAGAATCGTCTGGAAATATCAAAGAGGAATTCGATGAAGACATGTTGAAAAATGCAGAGTTCGAAGAAATGGACAATTCGGACATGTTCGAACCAGAAGTTCTAATAGATGGGAAGAATtctaaaaatgatatttattacTGCATATGTGGTGATTTCAAAGGAACATTCTCTGAATTCCGAGACCATGAAATCTATTGCGATAATCCAGTACTTAAAAAGTATCCGATATCTAAAAAGTTGACGTATATGTGTGCGTCATGTGACTTTATAGGAACACATGGGGAGTTTAAAGACCATGAATTTGATTGTTCTGATCCGAAGAAAGTGAGACGTTACGAATCACACTTCTGTTCTAAATGTGCGAAGGATTTTGGATCGATGAAAGATTATTTGGTACATTTAAAATTGCACGGTGTTAAGAATAAATGCTGTCCGCAGTGTTGTATGCAACTTGAACAGTATTCAGAACTTAAAACTCATCTACATACGCATATAAAGAGCCTATTTGTGTCAATGACTGTTATTAATAAGGATTATGAAAAGAGTCCAAGGGTTTTCAAATGTAAACTGTGCCGTGGGAATTTTAAGACAGCGGAGTTCTTTGCACATTGGGAGAAACATTTGGAGATTAAAGATGGGAGCAGTACCTCCGCTAAAGCTGATAGTACTCCGGTGAAAGAGGATTCTGTCTGCGATAGGAAAATGTTAGAATCGGGTGCTTTAAAAGATGCTATAGAATATCTACAAAAGAGGCAGCGAGGTTCTGGTAGCAAAGTGTGCGTGATATGCCAGCGTTTCTTCGAGAGACGGAACGACGTGAAGAGGCACATCGTGGAGCATTTGTTGAACGATGCGTACCTCAATAAGCACAAGAACGATGCGTTGACCTGCCAGATATGTGGACACATGTTCAAGAGCGCTGCACAATACAAATGTCACATGAGAGACCACGGGGATCTGCCAGTATTCAAATGCGAAATATGCAACAAATACTTCAGCGATTCAAGCAATTTCGCAAAACACAAGAAAATCCACAACATCAACGTGTTCCAGTGCGACTGGTGTAAGAAGAGGTTTCAAGTTAAAACGACGCTTATTAAGCACATGGAAATCCACAACAACCAAACGGAACCGTTAAAATGCACAAAATGCGACAAACAAAAGATATTCTACGACTTCACAAGCTACCGGAAACATATGCGAAGCTACCACAGCGGAACGAAGGAAAAACACATGTGTAAGATATGCCGGAAGAGGTTTATTTCTCTAAAGGAAAAATGGGACCACGAATGGGAAGTGCATAAGGAGAGAAAGAACGTTTCAGACTGTCCGATATGTAAAGCATCCTTCAGGAAGTATATGGACGTTAAAAACCATATGAAAGAGAAACATGCGAAGGAATGGTTGAAGTATAGTGCATCGCttaaaagtatatttcataacACAACTATGGGAGGGATATTAGGtaattcaagaatatttatatcgAATGATACAGCAGGGGAGACGTTGGTTGTTTATGAATAG
- Protein Sequence
- MSDSNKRRARKSKLVPRDYVDVDIEDEKSNKMQESPEIMPKIFIKSLDKLTAPASPSTEDSSIQFNVQVEVESCEDGDNLVIDESYFNDMTDQNDDDTDWAIGEATEPNQKDISIADNDEESLSEYMKFLSARSTATPVQHVSTTTKLTTEEILNEVDSILNNSHNVADQILSIEVKNIWGRLQHTPNKQDEHEVMIQEVLDSWMKWFHSKLNDPPLFYKCYVCEKAWWDLYDFREHIRNHRNLNVDIEAFGEQCCIGAYEEKPDENKQFPIDSDCWRCGKDFDSHMKPYYECGGCMLHFNSCIMLAEHEGSCVSYWYENNYDNRDKQDIDVHQCPLCARRLFSNYALMMKHMLAYHSVRSDRCTFVKTTTCVKCDGKYINYFTHYCRSKHGTIFCKNCDRRFSSKILFDIHQSLNKKAVKCKVCDLTLETQCKEVEHMLTHTEDFIVAFRCRICCEKNSTNMLILKRKIHDIVEHFKQCHKSKRFDNRLRDYDSVIIPTKLTQVKQRPGILEDSTSSGSVRERETNKRRTTKRAASKPSIIRKNTKSRVRSSRIIPNDNGTVLSTRLKNNVTKNLVKYTAIYKTNEDVNEKQNNFDSRSRFRKYFSNFNENDESNIENDDVRIEVFKHTTSNNSNNENTKCTNDINAPTSSRDIVIKQEINAIDDNAIDRNQDDVTIEESQVNIGIKSETDSDNANQTELLNTNDDFSTDNLDSDIKIKDEVLDDEQDPVNYDITIEETDISLSKVFRVSDRLKELTSKILVKEELIEDKEDNSKESSGNIKEEFDEDMLKNAEFEEMDNSDMFEPEVLIDGKNSKNDIYYCICGDFKGTFSEFRDHEIYCDNPVLKKYPISKKLTYMCASCDFIGTHGEFKDHEFDCSDPKKVRRYESHFCSKCAKDFGSMKDYLVHLKLHGVKNKCCPQCCMQLEQYSELKTHLHTHIKSLFVSMTVINKDYEKSPRVFKCKLCRGNFKTAEFFAHWEKHLEIKDGSSTSAKADSTPVKEDSVCDRKMLESGALKDAIEYLQKRQRGSGSKVCVICQRFFERRNDVKRHIVEHLLNDAYLNKHKNDALTCQICGHMFKSAAQYKCHMRDHGDLPVFKCEICNKYFSDSSNFAKHKKIHNINVFQCDWCKKRFQVKTTLIKHMEIHNNQTEPLKCTKCDKQKIFYDFTSYRKHMRSYHSGTKEKHMCKICRKRFISLKEKWDHEWEVHKERKNVSDCPICKASFRKYMDVKNHMKEKHAKEWLKYSASLKSIFHNTTMGGILGNSRIFISNDTAGETLVVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -