Hcos019140.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypsopygia costalis
Gene Symbol
RREB1
Assembly
GCA_937001695.2
Location
CAKZJU020000354.1:2059199-2063371[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.031 3.2 9.6 0.9 1 23 56 79 56 79 0.96
2 12 4.8 4.9e+02 2.7 0.4 1 10 117 126 117 127 0.93
3 12 0.054 5.5 8.9 0.2 1 23 265 287 265 287 0.97
4 12 0.0014 0.14 13.9 0.4 1 23 296 318 296 318 0.99
5 12 0.00084 0.086 14.5 2.0 1 23 324 347 324 347 0.97
6 12 0.0034 0.35 12.6 1.6 1 23 690 713 690 713 0.96
7 12 0.00028 0.029 16.0 1.3 2 23 909 930 908 930 0.97
8 12 0.029 2.9 9.7 5.3 1 23 936 959 936 959 0.97
9 12 0.16 16 7.4 1.4 1 23 992 1016 992 1016 0.90
10 12 0.056 5.7 8.8 0.1 1 23 1040 1063 1040 1063 0.88
11 12 0.026 2.6 9.9 0.3 2 23 1103 1124 1102 1124 0.92
12 12 0.032 3.3 9.6 5.3 1 23 1130 1152 1130 1152 0.97

Sequence Information

Coding Sequence
ATGAACAATATACTGGAAAAGCAAGAAGTGAGAGCTACTCGTACAACAAGCATTGACAGTGATAACCGATCGGACAAAAGCGAGGAAGAGGATTCTAGGAAATCTCGTAAACGAGCAGCTTCTACTTCCCCGAGTCCAATTCCACTAGATAAACGTATTGCTAGATTTGAGTGTAATAAATGCAGACAACGGTTTGATTCCGCAAATGCATTTGACGTTCATAGATTCACAGTTCATGGGGATGACACTAGAACTGATTACGAAGATCTAACTTACCATAAAAAGTTCCCAGAAATCACCCGCGGAATAAGTGATCGTAGCTCACTAGCACCTATCACAGATCAACGGTATAGATGTGATCTTTGTTCTAAAGAGTTTCCTTGCGGACAATCATTCGACATGCATAGAAAGGCTTGTGCCTGTTCTAATAGACTTTCGAGTCCCGAACGTGACAGAAGAGAAGATTTTTTCGCTAAATTAGATCTTAGAAACCGATCCTTTGGTATTCCTGGAACATTGACGCCCCCAATGGAAAGATTTACATCAAAATTCGAAGACAGTCATCTTACCAACGGCATAAGACATATAGATGCTGCTAGAGATTTAGCAGACATTCAATCCATTTTAAATGTCACATCTGCGGGTAGCCTTTTGGAGAGATTAACTGGTACAAGAGTTTCTATAGAAAACTCTGTCTTAACACCACCTGATACTATAGGCAAAGAAAGAGATAATGAGGAAACTCAGGACAACTTTGCAGCAGAATTCAGACGTATGAAACTGCGAGGAGAATTTCCTTGCCGACTATGTTCTGCTAAATTTCCAAATCTTCGGGCATTGAAAGGGCATAATAGAGTACATCTCAGTGGCACAGGCCCGGGGCCATATCAATGTAATATGTGCCCTCATGCATCGCTTGACAAAGCAGCTCTAGTGCGTCACATGCGTACACATAATGGTGACCGTCCTTATGAATGTGCTGTTTGCAATTATGCTTTCACAACAAAAGCTAATTGTGAACGACATTTACGAAACAGACACGCCAAAGTGACCAGAGAAGATGTCAAGCGCTCAATTATATACCATCCATCAGAAGATCCTAATAACGATGAAGTGAACTCAAAGTTGGCTCGTGATGAAGTAAAAAGATCACTTACATTCCATAGTCCTGAAGCCGAGAGACGTAATGAAAACACTGCACCTGATACGCCTCTTACGCATTATCCTCCCAGCTTTATTGCTGATAGGCACCCGGTTGCATCATTAATAACGAAATGTTTACCAGAAATTCCTACAGTACCCATTAGAGAACCTGAACAGCCGTTACCTAGGATAAAAGTAAAAGGTATCGGACAACTTACACAAATACCTGAATTCAGACCACCTGAAGTTACTTACAATAACTCTGATGTTCATTCGGACACTTATGATGAAGAAGCTCCAGTTGATCTTAGCACTAATGATGTTCTCGATCTTAGTAAAAAGAAGAGGGACGTGGATAATGATGAGCTCAAAGCTCCCCCGAGACCCTCATTTGAACCTGATCCAGCTACTATAGCTGCTACAGCTTTTGAAAAAACCCGTTTGTTACTTGCTCAACAACGACTTCTTGAAACATCGCTCCCAAAAATTGATCCGGCTTACTATGCCACTCAATTGTCACAGTTGTATGCTGGTACTGTACCAGGTCTTCCAGGACTTCCAATACCGCCGTCGTTTCCGATAAACCCTTATTTCTTGCAGCCTTCTTTTTTTTCTCACCCGACGGACTCCCAGGAACTTGTCGAAATAAAGCAACGTattcaaaaagaaataattcGAGGATTGAGTATGTCGGGTGGAAGACTAGTAGCGAGCGACCAAGAAATCCAACCAAAACAAGAACCTGAAGAAGAAGAACCTAAGCCTATTGTACAAGCTACGTCACCTTTACCTTCGCCACAATCAGAATCTCCCAGGCCATTAAGTAACAGTTTAGTACCACAAACGGATTCTGTAAAGATGGTTATAAAAAATGGCATACTAATGCCAAAACAAAAACAGAGGCGTTACAGAACTGAGAGGCCTTTTTCTTGTTCTCAATGCTCGGCTCGTTTCACCTTGCGCTCGAATATGGAACGCCACGTAAAGCAGCAACACCCACAACATTGGAGTGTAAGAAGACCTGCACCAAGAGCTCCTCCACCGTATCCAACACCTGATACTTTAGCTGACCGTGTCAAGTTTGCTTTGTTGGCCCGCCATCTAGAACGCCCTTTACAGCAAACCGATCGATCACCAATACGTAGAGATTCTGATGAGGTTGCTGATAATGAggaagatgaagatgataacCTTGTAATTGACGAAGAACCtgatttagaaaataaaactgATGAACATACAGCAGCACATCGAGCTGCTGCAGAAATTTTAATGGCGACTCGTCAGCAAGAGCTCAACAAAGACTTTGACCTGAAAATTGCtggaaatttaattaataaacctATCCCTATTGTCACTGATAAGAATGAGACTGGATCAGATCCTAATCCTATATCTGGTCAAGACTCTTCGCCTGTAATAGTACCTTCACGCAGCGATGAAGAAGAAGATGAGGAGGGATTAGTTGCTTCAACTAGTGAAGGCAATAACTCTGGAAGCGATGAAAACAGATCGGATGTAGATACAAGTACGCAACCACCTAAGAAAAAATCTGCATACAGTCTAGCTCCTAACAGAGTATCTTGTCCATACTGTCATCGAAAATTCCCTTGGTCGTCTTCACTCCGACGTCATGTTCTTACTCATACGGGTCAAAAGCCATTCAAGTGTCCTCACTGTCCCCTTCTATTCACTACAAAATCTAACTGTGACCGTCATTTATTAAGGAAGCATGGGGGGTCAGCACGTGCTATATTAGCGGAACCAATGCCTGACGCAGTGTCCCCACCACAACAAACACATGAAACAAGAACTGTCCCCGAAAGACCGTTCAAGTGCGCGTCATGCCCTACAAGTACTTTTTCGTCTATGGACACATTAAAAAAGCACATGTCTTCAAGACATGGGACGAGTGACTCGCAACCAGGATCACCTAATCCTGACATCAATGATGACTCACCTGACGGACTTGTATTTAAATGCCATCTCTGTGAAGCATCATTTAGCGATAGAGGGGGAGCTCTTGGACACTTAGCATCTGTGCATGCGGCTGAATATGAGCAACTTGTCAGTAAAGGCGCTTTGGATGCAGCCAGTGACCGAAGCGAAAGCGCTGATGATGACGAAAGGGGCAAATTCCCAGATCATGCTAACAGAAAGGTCGTCTGTGCATTCTGTATTCGTCGTTTCTGGTCAGCGGAAGATCTTCGTAGACATATGCGGACTCATTCTGGAGAACGAccatttgcctgtgacctgtgCCGTCGAAGATTTACACTAAAGCACAGTATGCTACGGCATCGAAAGAAGCACAGGGAAGAAGTAACTGACGATGATGAGGTGTCACCCCCAAATACTCCAATCGAATCGGATAGCATGGCCAatggatATCGTTATCATGACGATGATGGCTCAGGAAGCGAAATACCTAATAATGTGAATAATAACAACTCTCCACCAGCCGTGCCCTACGATAAAAAACTCAAGCTGGACATGACATCAAGAAAATATTCATCAGAAACTGAGATTGACGGTGAAAATGGCAGCGACCTTATTGGGAAATTATTAGGCATTCAGGACAAAACTATAATTAATAAACTCCTTTCTTCTGCAGATGAAGCTGCTAAATTTTTAGGTGTCAACAAATGA
Protein Sequence
MNNILEKQEVRATRTTSIDSDNRSDKSEEEDSRKSRKRAASTSPSPIPLDKRIARFECNKCRQRFDSANAFDVHRFTVHGDDTRTDYEDLTYHKKFPEITRGISDRSSLAPITDQRYRCDLCSKEFPCGQSFDMHRKACACSNRLSSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTSKFEDSHLTNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVSIENSVLTPPDTIGKERDNEETQDNFAAEFRRMKLRGEFPCRLCSAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLTFHSPEAERRNENTAPDTPLTHYPPSFIADRHPVASLITKCLPEIPTVPIREPEQPLPRIKVKGIGQLTQIPEFRPPEVTYNNSDVHSDTYDEEAPVDLSTNDVLDLSKKKRDVDNDELKAPPRPSFEPDPATIAATAFEKTRLLLAQQRLLETSLPKIDPAYYATQLSQLYAGTVPGLPGLPIPPSFPINPYFLQPSFFSHPTDSQELVEIKQRIQKEIIRGLSMSGGRLVASDQEIQPKQEPEEEEPKPIVQATSPLPSPQSESPRPLSNSLVPQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDTLADRVKFALLARHLERPLQQTDRSPIRRDSDEVADNEEDEDDNLVIDEEPDLENKTDEHTAAHRAAAEILMATRQQELNKDFDLKIAGNLINKPIPIVTDKNETGSDPNPISGQDSSPVIVPSRSDEEEDEEGLVASTSEGNNSGSDENRSDVDTSTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPMPDAVSPPQQTHETRTVPERPFKCASCPTSTFSSMDTLKKHMSSRHGTSDSQPGSPNPDINDDSPDGLVFKCHLCEASFSDRGGALGHLASVHAAEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEVTDDDEVSPPNTPIESDSMANGYRYHDDDGSGSEIPNNVNNNNSPPAVPYDKKLKLDMTSRKYSSETEIDGENGSDLIGKLLGIQDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00961349;
90% Identity
-
80% Identity
-