Hcos013136.2
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000229.1:847707-850438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.49 50 5.8 5.5 1 22 202 223 202 226 0.92 2 18 0.015 1.5 10.6 0.5 2 23 237 258 236 258 0.97 3 18 0.92 94 5.0 1.3 1 23 288 311 288 311 0.95 4 18 6.3 6.4e+02 2.4 1.7 3 21 316 333 315 334 0.91 5 18 0.015 1.6 10.6 0.3 2 23 366 388 365 388 0.96 6 18 0.028 2.9 9.7 4.9 1 23 394 417 394 417 0.96 7 18 0.001 0.1 14.3 0.1 3 21 423 441 422 442 0.94 8 18 0.012 1.2 11.0 0.8 1 23 450 473 450 473 0.97 9 18 0.0018 0.18 13.5 0.7 1 23 478 501 478 501 0.95 10 18 0.01 1.1 11.1 0.1 2 23 514 535 513 535 0.95 11 18 0.0097 0.99 11.2 1.2 1 23 541 563 541 563 0.98 12 18 0.004 0.41 12.4 0.4 2 23 599 620 599 620 0.95 13 18 1.4 1.4e+02 4.4 0.3 3 23 626 646 625 646 0.90 14 18 0.0053 0.54 12.0 0.4 2 23 663 685 662 685 0.96 15 18 0.00013 0.014 17.1 3.0 1 23 691 713 691 713 0.99 16 18 0.0014 0.14 13.9 5.3 2 23 720 741 719 741 0.95 17 18 0.0028 0.29 12.9 0.9 1 23 747 770 747 770 0.94 18 18 0.023 2.4 10.0 0.2 2 23 776 798 775 798 0.95
Sequence Information
- Coding Sequence
- ATGGTAGAACAATGTAATATATCAAAAACATCACGATACGAAATAGACCACATTTCAATGATAAAGaagaaaatacataatttatgtcaCGCACCAAAATTTTGTGGAATATGCTATGAAGCAAGTAGTACGCTTTGTCACTTAGATTCTGAATTCTACTTTATTATAAACGGAAAAGAACTGAAAAGTTCGATGAAGGATATTGTGAGCTGTGTTTTAGGGACAGAGtgGAAGGAACTCTTATCTACCTTCTACATTTGCAACTGTTGTTCAGAAAAAACTTTACAATCTTATATTTTCATTCACAACGTGAAAGAATTGTCAAaagttgtaaatatttacattgaaGATTTGGCGTCCAAAGTAAATGATGTCAACGATCAGCTAACAGACGCAACGTACGAAAACTGCAATGTAGCTATTGTGCTCGAAAAATCAGAAGAATGTTCAAACCACATAGATATAACGGAGTTCTGTACTAAACTATCATCGATacatgaaagaaaaaaagaattagaCAATATTAATAGCGATCAAAATACAGAGTTACGTAAAAGAAAGTTTACAAGAATGAAAACGAAAAGATTTGCAAAGAATTCAATCTATAAATGTATGAAGTGTAAAATGGTCCTATTTAAGAAAAGCTCTCTGTTGCAACATCAAAAACAATGCAAACACCCAATCAAATCTGGGGGTGTGCAAATGATAGAATGCAAAATATGCAACGACACATTCAAAACACAGTTAGCGATAAAACAGCACTACAAAGTCCACGGCATGGAAAGGTGCAGGATCTGCCATTTCATAATGCCTGAAGGTAGTTTGCTGGCTCATTTGAAACTAAACCACGAGGAAGTTATCCATGTATGTGAAATTTGTGATCATGTTTCTTACTCAGTTGTTACAGCTGAAAACCATTTAAAGAAACGACACTGCAATCCTTTGTGCGTTATGTGTTTAAAAAACTTCAAAGAGTCAGACTTAAAAAATCACTGGTGTAAGTTCAGGTGTGTAGACTGTGTCGAGATACCTTGTATACATCATAAATACTTAGTGTCCTATAGGGAACAAGTATTGAGAGGAGAGACAAAGATGAAATGCTTAGATTGCgactatatttactttaaaaagaaagCTTTAATTGGTCACATCAATCGAGAACATTTAGACTATCATCCGTTCACGTGCGCGCATTGTTCACAGCAATTTTACTCCAAAGTAACGTTAAGCCATCATTTGGCAAGGTACCATAAAGACAGCCAATTTTGCGAGTATTGTGATGTTGATTTCAAATCAAAGTCCTCATTAGAAGAACATGTAAAAATCTGCAAATTAATTACCAGACCATTTCAATGTGGACAATGTGTCTCGTCTTTTGACTCGCAACAAGAATTGGAAAGTCACAAAAATTCTAAACACAAAGTTGAATTATATCCTTGCACGCTGTGTAATAGGAAGTTCGTATCGAATTTGAAGTTAAAGGAGCATGAGCTAAAGATACATAATGGAATACAGCTAAAGAGAAAAAGAACAAATTTAGAATGTACGATTTGTAACATAAAGTTTGATGGGAGGAAAGAATTTATGGCACACGTTGCGATACATGGCCCCGGGACTAAGTTCCCTTGTAAAATATGCAAATCAGAATATGACGATATTAAAAAACTTCACGCGCACATGCGCCTCCATGGAGATGATGTGGTGAAGTGTGGTACTTGCAATAAACTTATAACAGAGGCGTATGTCGCTCAGCACTTAATGTACTGTGAAGCGAATAGAAATGACGAGAACAACACATGTGAAATCTGTGGGAAAACTTTCCAAAGTGATTCAATTTTGAAGGTACATAAACAAATCCATAAAGAGCCCGAAGCTTGTCCATTTTGTGGCAAATTAATGAAACCAATTTACTTAAAACGCCACATAAAATACAATCACGGGCCTAAAAGGGAAAAGAAACAGGctaaaaagaatttgaaaatgCTTAAATGCGACTGGTGCGGGCATATGGTCACTAGAATGGGAGAATTGGAATCCCATGTTAATAGATTTCATCTCAAAATTAAGCCTTATGAATGCAATGTTTGTAGTAAGAAATTTTGTGGCAAAGAACGCCTCAAAGAACACATCCAAACACATACGAACGAAAATAACTGTTATTGTACAGTTTGTGGTAAACGGTTTGCAAATAAAGTATGTTTGAAAATGCATTCGCGCTTGCACTCAGGGCTGACGCCGTACGAGTGTGATGTTTGCGGAGAGAAATTCAGATCTTCAAGTATTATGAAGactcataaaattaaaaagcacACAGAAAAGACTGTGCCATGCCCTCTGTGCGATACAATGTTTTATTTGGCCAGGGAAATGCGCAATCACTTTAAGAAAGTTCATTGGAAAGTTAAAGGGAAGAAATTTGATCCGAGGGAAgtaaaagaattatcgaaagaATATTACTATCTCTTTGAAGACCGCAGGCGGCCCAAGGTAGATGACAATGACCTTGTTTTATCATAG
- Protein Sequence
- MVEQCNISKTSRYEIDHISMIKKKIHNLCHAPKFCGICYEASSTLCHLDSEFYFIINGKELKSSMKDIVSCVLGTEWKELLSTFYICNCCSEKTLQSYIFIHNVKELSKVVNIYIEDLASKVNDVNDQLTDATYENCNVAIVLEKSEECSNHIDITEFCTKLSSIHERKKELDNINSDQNTELRKRKFTRMKTKRFAKNSIYKCMKCKMVLFKKSSLLQHQKQCKHPIKSGGVQMIECKICNDTFKTQLAIKQHYKVHGMERCRICHFIMPEGSLLAHLKLNHEEVIHVCEICDHVSYSVVTAENHLKKRHCNPLCVMCLKNFKESDLKNHWCKFRCVDCVEIPCIHHKYLVSYREQVLRGETKMKCLDCDYIYFKKKALIGHINREHLDYHPFTCAHCSQQFYSKVTLSHHLARYHKDSQFCEYCDVDFKSKSSLEEHVKICKLITRPFQCGQCVSSFDSQQELESHKNSKHKVELYPCTLCNRKFVSNLKLKEHELKIHNGIQLKRKRTNLECTICNIKFDGRKEFMAHVAIHGPGTKFPCKICKSEYDDIKKLHAHMRLHGDDVVKCGTCNKLITEAYVAQHLMYCEANRNDENNTCEICGKTFQSDSILKVHKQIHKEPEACPFCGKLMKPIYLKRHIKYNHGPKREKKQAKKNLKMLKCDWCGHMVTRMGELESHVNRFHLKIKPYECNVCSKKFCGKERLKEHIQTHTNENNCYCTVCGKRFANKVCLKMHSRLHSGLTPYECDVCGEKFRSSSIMKTHKIKKHTEKTVPCPLCDTMFYLAREMRNHFKKVHWKVKGKKFDPREVKELSKEYYYLFEDRRRPKVDDNDLVLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -