Hcos027052.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000552.1:219239-248020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.001 0.1 14.3 0.6 2 23 141 162 140 162 0.93 2 10 0.00075 0.076 14.7 2.4 1 23 168 190 168 190 0.96 3 10 9.1e-05 0.0093 17.6 0.3 1 23 286 308 286 308 0.98 4 10 8.5e-05 0.0087 17.7 0.2 3 23 397 418 395 418 0.92 5 10 0.0033 0.34 12.7 0.3 1 23 433 455 433 455 0.93 6 10 2 2e+02 3.9 0.1 8 23 485 500 485 500 0.96 7 10 0.0008 0.082 14.6 0.2 1 23 506 528 506 528 0.97 8 10 0.00045 0.046 15.4 0.3 1 23 534 556 534 557 0.95 9 10 6.6 6.7e+02 2.3 0.7 1 23 570 592 570 592 0.93 10 10 0.0021 0.22 13.3 0.1 1 20 750 769 750 772 0.94
Sequence Information
- Coding Sequence
- ATGGATGCAAATGGTGATAACTTCTCTCTCCGCTGGGAGGAAGAGGTGGTTGTGAAGCAGTGTCCTGTACCAGAAGAGCATGAACAAGGAGTTTGTCATCTTGAAAATATGGCAACCCAATACACTAATATgACATCAGAGGATATCATAGCTAGCACAGATCAAATGGCAGCAGAGAATCTGATGTACCTGTCTCAAGATGTAGTGAGCTATACAGAAACAGCAGAACTCGATGATCCAAATGTAGAGTGTGTCACTGAAGAAGTTATCACTGATGACTGGGTCTTATCTGGAGGACAGGAGagAGTTGAAGTACCCTTGGAGCATTTAACAAATCCAGTACTTGATGTCAATGAAGAGAATGACATTGATGTACCACTGCCAACAGATCAGGACGAGTACACGGCGATGCGGCCGTGGCCGTGCGACTTCTGTTCACGGCGGTTCCGCAAGAAAGCGGCGCTGGTGCACCACATGGTGGCGCATCAGAACGATCGGCCGCATGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGACCTCATGAACCATCTTAAAGTGCACGCCTTCGTGCCCGACACCCACGACCCCATCGACTATGAAGATATGATAGATACAGAACAAATTGTGAAACCAAAGAAAAAGAGAGGTCGCCGGAAAAAGAACCCAGAACCAGTGGAGAACGGCATGTGGGAGAACATGACGTCAGCGCGCACGCAGCAGTGGTCGCGGCGGCGGTCGCCGACGCGGTCGCGCGCGCCGGCCGCGCCGTCGCCGCCGCCCGCCGAGCCGCCCTCGCCGCCCACGCCGccctcgccgccgccgccgcccaccGACCCCGCCCGCCCCTTCGTGTGTCGGCACTGCGGCGTCGGCTTCGCCAGGGAGAAGGCGCTGCAGTCTCACGCAAGGATCCACGGCGGCGACTCGCCGGTGGAGTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCCAGCCACGCCGCGCACAGGCACCCGCACCagccgccgcgcccgcgcccgccgcccgcAGACACCGGCTACGGGAACACGGACTCGGACGATGACATGGACTACTGCCTGTCTCCGTCGCCGcacggcgggggcgggggcgggggcggcggcggggcggaGCGCGCCGTGCCCGACTCCGTGCGCGGGCCGGAGCTGTTCTGCTCGCACTGCGGCGTGGCGTTCCAGCGCGCGGACCTGCTGCGCCGGCACATGGCCGCCGCGCACGTGTACAAGCGGCATGACAGCGGCAGCAGCAACTGGGGCGAGCACACGTGCGACGTGTGCGGCGAGACGTGCACAGATGCGCTCCAGCTGCTGGCGCACGCCGAGGGGCACGCGGACAGGGCGCGCGCGCACCACCCCACAGCCAGGTACTTATTCTCCCCCCGACAGGCCAACACTACCACATTTTACTCATCATGCAAAGTGTTCGGGTCGCGCAGCTCGCAACAGATTCACATTCGCATTCACACTGGTGAGCGGCCGTACGCGTGCCGTTTCTGCTGGAAGGCGTTCGCCGACGGCGGCACGCTGCGGAAACACGAACGAATACACACAGGCGAGAAGCCGTACGCGTGTGCAGTGTGTCCACGCGCGTTCAACCAGCGCGTGGTGCTCCGCGAGCATGTACGCTCTCATCACTCTGCACCCGATCGTCGCGCGAACGGTGGCCCCGCATATTGCTGTGTTGTTTGCAGTGATGTCCTTCACTCCAGTGCAGATTTGGTTCAACATTTGATACAACACTGTGACATGAACACAGCATTAAAGAGGCAGCCCCAGACGGGGCCGCGGAAGTACAAGCGGAGACGGAAGTTAAAATCGGACCAGTGGGACCAGGGGTCTCCGTCCCCGGCGGCGTCCCCCGCGTCCCCCGCGCGGGCTGCGACCCCGGCCGCGTCCCCGCCGTCCCCGTCGCCGTCCCCGCCACCAACCCCGCCACGTCGGCGCCGCCGTCGCGTCGTGCCAGCGCCGCCGCCGCGTCCGCGCATGATACACACGGAGGAACCACGACCCAGGACTAAACAGGTGCGGTCCCGTCGTCCCCCGCGGCGGCCGGCAGACGACTTGCGCGCCATCCGCATGAGAAGTCGCTCCccctcgccgccgccgcccaaGGCGGACTCCtgcgacgacgacgacgacctcGACCGCCAGGTCAAACGGGAGATCAAGGAGGAACCTCTCTCGCTGCCCCTCGCCGACCTCGGCGGCCCGTATAAGTGCGAGATGTGCTCCGAAGAGTTCCCGCGCCGCGACGACCTGCTGCTCCACGTGCCCGTACACATCTGA
- Protein Sequence
- MDANGDNFSLRWEEEVVVKQCPVPEEHEQGVCHLENMATQYTNMTSEDIIASTDQMAAENLMYLSQDVVSYTETAELDDPNVECVTEEVITDDWVLSGGQERVEVPLEHLTNPVLDVNEENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALVHHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDTHDPIDYEDMIDTEQIVKPKKKRGRRKKNPEPVENGMWENMTSARTQQWSRRRSPTRSRAPAAPSPPPAEPPSPPTPPSPPPPPTDPARPFVCRHCGVGFAREKALQSHARIHGGDSPVECGECGELCWSREALASHAAHRHPHQPPRPRPPPADTGYGNTDSDDDMDYCLSPSPHGGGGGGGGGGAERAVPDSVRGPELFCSHCGVAFQRADLLRRHMAAAHVYKRHDSGSSNWGEHTCDVCGETCTDALQLLAHAEGHADRARAHHPTARYLFSPRQANTTTFYSSCKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCSDVLHSSADLVQHLIQHCDMNTALKRQPQTGPRKYKRRRKLKSDQWDQGSPSPAASPASPARAATPAASPPSPSPSPPPTPPRRRRRRVVPAPPPRPRMIHTEEPRPRTKQVRSRRPPRRPADDLRAIRMRSRSPSPPPPKADSCDDDDDLDRQVKREIKEEPLSLPLADLGGPYKCEMCSEEFPRRDDLLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -