Hcos007913.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- ZNF526
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000139.1:49474-92219[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.7 1.8e+02 4.1 0.9 3 23 90 112 88 112 0.84 2 14 0.00012 0.013 17.2 0.7 2 23 119 142 118 142 0.97 3 14 0.087 8.9 8.2 0.2 1 23 148 170 148 170 0.93 4 14 0.00075 0.077 14.7 2.9 1 23 176 198 176 198 0.98 5 14 0.51 52 5.8 0.1 2 19 209 226 208 229 0.89 6 14 0.1 10 8.0 0.1 1 23 307 329 307 329 0.97 7 14 1.8 1.8e+02 4.1 7.5 1 23 336 358 336 358 0.95 8 14 0.00097 0.099 14.4 1.8 1 23 400 423 400 423 0.95 9 14 0.00043 0.044 15.5 0.9 1 23 430 453 430 453 0.98 10 14 0.02 2.1 10.2 0.2 2 23 475 497 474 497 0.96 11 14 6e-05 0.0062 18.1 0.8 2 23 536 558 535 558 0.95 12 14 0.033 3.4 9.5 0.7 1 23 565 587 565 587 0.97 13 14 0.0001 0.011 17.4 0.1 1 23 593 615 593 615 0.98 14 14 0.00065 0.067 14.9 0.9 2 23 622 644 621 644 0.94
Sequence Information
- Coding Sequence
- ATGGCGAAGTCGCGCaaagGTAAACTATCTGAAATAGATATCTTAAGAGAGCTTAATTATGATGAGGTAGATATGGAAGAAGAAGACAGTGAATGCGAAAGTGACTTCGTCGCGTGCCGCGAGGAAGAAATTGGCGTGGAAATCCCACTGCGCAATGAAGAAGATTGGAATGAATCGGACGTTGAACTTCTTTCATCTTTACCCGTACAACCCCAATCGCAATTCCACGACACGACAAACGCGTCGACATCAGACAATCGTTACTGGTGCGTGGAATGCGAGCGCACGTCGTTCTCGACCGAGAGCGAGCTGTTCGACCACGTGCACTTCCAGCACGACAAGCAGAAGAGGTGGCAGTGTCCTGTCGCCGGCTGCGGGAAGACCTTCCATCTGCGGGCAACCCTAACAAAACACAGTCGCACACACACGGACACCCGGCGGTATATATGTGTCACCTGCGGCAAACGGTTCCTGGACAAACAGACTTTGGATGAGCACGGAGTCACACATTTGCAGATAAAGCCGTTTCAATGCCACATTTGCTTGAAGCAGTTGACTCGAAGGTCTCGTCTGAGGATGCATATCAGGGCTCACGAGGAGGCCCTCACGCCCAAACTGGTGCTGGTGTGCGCTGTCTGCAGCCGCGCCTTCAGGGATCATAGGGATGCTCAGGAGCATGCCACAAAATCGACCGAATGTATAGAACAGTTCGCGAACGAGCTGAAGGAGGAAGCCGAAGAGGTGACGATGCTTTCGCCGACTTCTGGACACATGCGGCAGACCGTGCAAGTTGTTGagtCCCCAAAACTGACGAAGCCGATAAAACGCCAAGTGGAGTATGCCACAGCGGAGCCGTTGTTGTCCAAGCTGGTCGACGAGGCGAGAGCCATCATACGCGTCGTCGAAATTGAGAAAGCCTTCCGATGCGAGTACTGTGAAGACGTGTTCTACTTAGAAGAAGGGCTGAACGTCCACCGAGCGATACATAAGGGAGTCAAGGACCCTTTTATATGCCATATTTGTAAGGTCACCTTTACTACGTATTCCAGatgcaCAACTCACAAAACAACGCACGGCTTCTACAAGCGGCCTCTGGCCGAAGTAAAGAAGCAGGCCGAGAGGCCGAAGGATTCACCAGAGGCCGGCCCCTCGGCCATAGGCATACTTGGATATGGAGGGTTCCCCGTTGTCAAGCATTTCTTATGCGAGGACTGTGGACGGTCCTACTTACACTGGACGTATCTACAAGTGCACAGACGAATGAAACATTCCAATGAGAATTTAATGTTCAAGTGCAATCAATGTGATGTGCAGTTTCCTAACAGCTGGAGTTTGGCGTATCATAGAAAAAAGATGCATCTCAGGATAGGGCAAGAAGAGAACGGAAGCGCGTTGAAGATAACCAAAGAAGACTATAGGATACCCTGCCGCGATTGTGAAGAGATCTTGCCAAACAAAACAGCGCTTTATCGACATAGAAAGAAGGAACATAGTGATATGTCTTTGCAACTTATAAGTGGTAAACCAGGTGCGTTTCCCAGAGGACCAGTCAGCAAGCAGTGCGGCAGTGGGCCGCCGCTGGAGCTCCACCAGTCGCGTGGCTCTACTTGTTCCAAATGTGGAGCCAGCTTCTCGCATCTCGGGGATCTGCGTACACATCTCAAGGCCGTGCACGGGTGCGCGGCGCCGGAGCACTCGTGCGCCGTGTGCGCGCGCTCGTTCCGCTCGGCGTCCATCCGCAACGAGCACATGCGCGTGCACACCGGCGAGCGGCCCTACCCCTGCGACCTCTGCGGAGTCGCCTTTCGCAGATCGACCGCGATGCGTAACCATAGATTGATTCACACGGGCGTCCGTGCGTGGCCGTGCGGCCGGTGTCCTAAACGATTCAGGATCAAGTCCGACCTACGGACGCATTTCAGGCTGAAACATCCGGCCTACTTGGCTGTCATTGAGATTGCAGGTTTGAATCCGACGCAGGACGAAATAATGGAACAACTACGAGTGAACAATATACAGCACgagaaaataattgaaattacAAAGATGACGTTCACGAAGGGTACCACCAGCATATTACCGAGCAGCGGTCGCGCGTTGTCGCTGCTGGGCCACGTGCCGAGGACCAAGGTGGCCTGCACCAGGCCGGTCTCGCAGGACGCGCCCGAGCACCCCCCTGTTCGCCGAGGTCGCGGCATCTCGAAGAATCCGCGCAGGCCCAAGATACTGCAGCGCGGAGAAGACGCCAGACCAGATCCTTCAAAGTATTACGTTGCCTTGAACATCTCCGGAGAGGAGCTGACTGACGTGGACGTTCAGATGTTACTTCAAGACGGCACAGAAGGGAACAGTAACGAAATCGGTCAAATGCAATTGAACGATACGATCAATTTGGAGTAG
- Protein Sequence
- MAKSRKGKLSEIDILRELNYDEVDMEEEDSECESDFVACREEEIGVEIPLRNEEDWNESDVELLSSLPVQPQSQFHDTTNASTSDNRYWCVECERTSFSTESELFDHVHFQHDKQKRWQCPVAGCGKTFHLRATLTKHSRTHTDTRRYICVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHIRAHEEALTPKLVLVCAVCSRAFRDHRDAQEHATKSTECIEQFANELKEEAEEVTMLSPTSGHMRQTVQVVESPKLTKPIKRQVEYATAEPLLSKLVDEARAIIRVVEIEKAFRCEYCEDVFYLEEGLNVHRAIHKGVKDPFICHICKVTFTTYSRCTTHKTTHGFYKRPLAEVKKQAERPKDSPEAGPSAIGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHSNENLMFKCNQCDVQFPNSWSLAYHRKKMHLRIGQEENGSALKITKEDYRIPCRDCEEILPNKTALYRHRKKEHSDMSLQLISGKPGAFPRGPVSKQCGSGPPLELHQSRGSTCSKCGASFSHLGDLRTHLKAVHGCAAPEHSCAVCARSFRSASIRNEHMRVHTGERPYPCDLCGVAFRRSTAMRNHRLIHTGVRAWPCGRCPKRFRIKSDLRTHFRLKHPAYLAVIEIAGLNPTQDEIMEQLRVNNIQHEKIIEITKMTFTKGTTSILPSSGRALSLLGHVPRTKVACTRPVSQDAPEHPPVRRGRGISKNPRRPKILQRGEDARPDPSKYYVALNISGEELTDVDVQMLLQDGTEGNSNEIGQMQLNDTINLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -