Hcos023036.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000451.1:1157178-1163179[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.6e-05 0.0027 19.3 0.5 2 23 61 83 60 83 0.96 2 23 0.001 0.1 14.3 4.2 2 23 124 146 124 146 0.97 3 23 0.0002 0.021 16.5 0.3 1 23 196 219 196 219 0.97 4 23 0.00059 0.061 15.0 0.1 1 23 279 301 279 301 0.97 5 23 0.015 1.6 10.6 5.5 2 23 313 334 312 334 0.97 6 23 0.07 7.2 8.5 1.9 2 23 346 367 345 367 0.96 7 23 0.0031 0.31 12.8 1.0 1 23 377 399 377 399 0.98 8 23 0.0042 0.43 12.4 4.1 1 23 426 448 426 448 0.96 9 23 0.00029 0.03 16.0 3.5 1 23 459 481 459 481 0.97 10 23 9.9e-06 0.001 20.6 0.8 1 23 489 511 489 511 0.97 11 23 0.00031 0.032 15.9 0.7 2 23 531 553 530 553 0.97 12 23 1.8 1.9e+02 4.0 0.5 1 23 571 593 571 593 0.94 13 23 0.024 2.5 9.9 4.5 1 23 600 622 600 622 0.99 14 23 0.096 9.8 8.1 2.3 2 23 633 655 632 655 0.95 15 23 0.0055 0.56 12.0 0.2 2 23 678 699 677 699 0.95 16 23 0.041 4.2 9.2 1.0 1 23 779 801 779 801 0.96 17 23 3.4 3.4e+02 3.2 5.2 5 23 811 829 809 829 0.94 18 23 0.012 1.3 10.9 0.7 2 23 840 862 839 862 0.95 19 23 0.29 29 6.6 2.3 2 23 879 897 879 897 0.89 20 23 1.3 1.3e+02 4.5 1.8 2 21 901 920 900 921 0.92 21 23 0.46 47 5.9 0.7 2 23 970 991 969 991 0.93 22 23 0.00011 0.011 17.4 0.6 2 23 1002 1024 1001 1024 0.97 23 23 0.29 29 6.6 2.1 2 20 1062 1080 1061 1082 0.93
Sequence Information
- Coding Sequence
- ATGATCTCCTCCGGTGTCCATTCGGAAGGGACACCACGTGTAAGACCCATTCTTGTCACGCTGAATGTAGGAATAAATgctttaaagttattattaatcaAGCAAGGAGCCAGCGTAGGAGACGATGCCGTGTCTTCGAATTCGTCGTATAGCAACAAGTATGTGACTCGCGGTCCGAATAAGTGTCCGTATTGCGAGAAGTCTTTCGCGTACAAGAAGGCGCTAAGTAACCACATAGCGAAGATGCACGACTCTGTAGAAGTGAAAGTGGAGCCACCCGACAAGAACGCCTCGACGAGCCTGCTGGCCGAGAGCAGCCCGCGCAGCGAGTCGGAGTCCAGCCAGGACGACGAGGAGGACGACGACAACACCTGCGACATCTGCGAGAAGCAGTTCTCCTACAAGCGGCTGCTTCTTCACCACAAGCGCACGAAACATAACATGAGCTCGGGCACGAAACGAGCGAAAATTAATCTCAAAGACTGCAGCGTCCGCTGCCTGATTTGTGACGTAGAGATGAAAGTGAGCGGCGTGAACGAGCACAATCAGAAGCACATCACGGCCAACATGAAGCCTCGGAACGTGTACACGTGCGCCGAGTGCGGCGAGAAGTTCAAGGCGTGCAGCGCGCTCGCCAACCACATCAAGCTCATCCACCGATTGAAACAGACGCCCAAGGCGAAGGTGCCCGCGCAGCTGGAGGGCGGCTCTGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACCAAGGCGGAGCCCCTGGACGACATCCAGAGTCACAACGGCTTTGGGGAGGTTCCGTCGAAGAAGGATGGCCCGCTCGTCAACCTGAGCGGCTTCACGTGCCCCATCTGCGGGAAGACCATGGGCACGCTCATCTCGCTCAAGAGGCACGTCAACTGGCACACCAATGTCGGCAACAATGTGCAGAAAATTGTCGAGTGCTTCGTTTGTAAAGAGAAGTTCCGCTTCCAGTGCCACTATAAGATCCACATGAGGGAGCACTACCGTGACCCAAACTTGGATCCCAAGTTTCTCACGTGTACTATTTGCAACCGCAAAAGCAAACATTTGCGTGCGGCGCAAGCTCATATGAACTTCCATAAACAGACACGATTCCAAAACAAGGATTACCAGTGCTCCATCTGTAAACGTGTGTTCCAGTACCGAAAGGTATATCTCTCGCACATGGCCATCCACTACAAACGCGGCGAGAGCAATCAGAACACTATCGTGGGCGACTACGTGCGACCCAACCAGGTGGGCTTTGACGTCAGCCACACGTGTCAGCTCTGCGGCAAGGTCTGCGAGTCCGAGAATTCACTTAAACACCACCTCATCTGGCACAAGTCCAAGACGTTACTGTTCGGAGCGCGGCACGAATGTCACATTTGCAAGTTAGTATTCACGAACAAACGGAGGCTCGAGCTTCACATCAGAGAGCATTACGAGGACGAGAACGGACCGTTCAAGTGCACCATCTGCGGCAAAGGGTATACGGACGAGGACTACTTCCGTAGGCACGTCAAAGGCCACAACTTCGACCACCAGTCGCACAAGAAGAGGATAGAGAAGCTGAGAAAAGACAAAGTGAAATGTCCTATTTGTACTCGCTACTACCCGGATCTCATTCATTTGATTCGGCACCTGCGACGGACGCACCCCGAGAGCAAGATGATCAAGGAGGACCCGGACGCGCCGCCGGCCCGCTACTACTCCTGTAAGCTCTGCGCGAAGATATTCCTCGACGAGCGCCGGCTTCAAATGCACGAAGAGCGTCACTTGAGGAAGCCCGAGTTTTTCAAGTGCAAGTTCTGCGGCAAGAAAACCGTCTCCCTGAAGAATCACCGGATTCACATCCGATCGCACTTGACGCACAAACACTTGGAGAACCCACTGAAGTGTTCGCACTGCGAGGAGCAGTTCATCAAGGGCTACGACCTGCACTACCACCTGCGCGACGTGCACGGCATCGACGAGACCTGGATCGCGGAGCGCAACGAGCAGCCGCTGGCCGGCCCGCTCAAGGAGCTGCAGTGCGCCGTCTGCTACAAGGTGCTGGCCAGCAAGGGCAACTTCGAGCGGCACCTCGACTACCACAACACGCTGCGCTGCAACTACTGCTTCGACTACTTCAGCGCGCTGCGCTTCCTCGAGGGCCACCTGGGCTTCTCGTGCGACAAGAAGAAGTTGATAGGTGACACCGAGGTCCACCCGCGGAAAATCAAATGTCACGTTTGCTACAAGGCTTTCCACCTGCAAGTCAAGTTGGATTGCCATTTGCGAACCCAGCACAACATCAAAGTGAACAAGGAGACTTCGGCGAACAGGAAAGATTTCGTCTGCGATTATTGTTTCAAGCTGTTCGAGAACGATTACGCTTTGAGTAATCACAAAATATACCACCGCACTATTGGCTATTTCGGCTGCATCTACTGCAACAGAAAGTTTAACACGATGACTCTGTAccggaaacataaaaatcatcaCTTTGCGCAGCTGAACGTGGACGAGCCCACGAAGTGCGAGCACTGCGACGAGACGTTCGTCGCGTTCCGCGAGATGATATACCACATGCGGGACGCGCACGGGGACGACAAGGAGTGGATCATCCTGCCCAAGGAATCCATCGAGGAGGAGTGCCCCATCTGCAAGAAAGTGTTCTTTAACTTGCACAGGCACCTGGATTACCACGAGGAAAACAAGTGTAGAAAGTGTGGCGAGTACTTCTTCTCGAGGCCCGACTACGACAACCATCTCTGTTCCATCGAGAGCGACGAAGAGACCGACAGACGGCTCGCCACCGATCCGCTCGCGAAGTACGAAGAGTGTCGCTTTTGTTTCAAGCACGTGACCAAACGGGACTCTGAACTAAAGCACAATCGAATACACAGTATATCCGGCGCCATATCGTGTCGGTTCTGTTCGCTCAAATTTAAGACTGTCGATGCGTTCAACATCCACGCGTTCTCTCACCGCAGTCGCAAATATAACAAGAGGCCGATAAAATGTCGCAAATGCGGCGAGAAGTTCGTCAGGTACGGCCCGTTCACGAGGCACATGATGACTGTACACAAGTCCACAAAGAAGATGCACTACCGCGCCTTTGTGAAGGCGGAGCGATGCGTCATATGCGGCGACCACTTCCCCAATCTGCACAATCACTACCGCGCGCACTTGCAGAATCAGTGCCAATCGTGTAAAAAGTACTTTACATCGTCTAAGATGTTCGCGGCGCACGAGTGCGATAAGGAGGACTCGGATCCGACGAAGGTGTTTGTCAGTGACGAAAATCTCAGTTTCCACATCAATGCGTACGTGCCGCAGGACGAGAAGGATAACGAGAAATACTACGGCCACAGCGACGAAGAGGACGAACCCGAGCCGGAGGAGCCCGCCCCGCAGCACGAGCTCACTGAGGTGAAGGACATAAAACCGGGAGGAGAGAGTCAGGACGAGGAGAGCCAGGATGAGCAAATCGTGAATCGAGATCCGGTCCAAGACGAGGTCGAGAGGAACCTGCATAACATGGCGCAGTCCCCCATAATATCTGACGTGTTGTCGCTCTATCAGAAACAGGAGAGCCAAACGGAAGATGATGACGTGGTACTTTTGACTGATGACGACTCCATGGACATTGACGTCAGTATACCTGTCATTACCATTGACTAG
- Protein Sequence
- MISSGVHSEGTPRVRPILVTLNVGINALKLLLIKQGASVGDDAVSSNSSYSNKYVTRGPNKCPYCEKSFAYKKALSNHIAKMHDSVEVKVEPPDKNASTSLLAESSPRSESESSQDDEEDDDNTCDICEKQFSYKRLLLHHKRTKHNMSSGTKRAKINLKDCSVRCLICDVEMKVSGVNEHNQKHITANMKPRNVYTCAECGEKFKACSALANHIKLIHRLKQTPKAKVPAQLEGGSELADFCEVVVTKAEPLDDIQSHNGFGEVPSKKDGPLVNLSGFTCPICGKTMGTLISLKRHVNWHTNVGNNVQKIVECFVCKEKFRFQCHYKIHMREHYRDPNLDPKFLTCTICNRKSKHLRAAQAHMNFHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESNQNTIVGDYVRPNQVGFDVSHTCQLCGKVCESENSLKHHLIWHKSKTLLFGARHECHICKLVFTNKRRLELHIREHYEDENGPFKCTICGKGYTDEDYFRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICTRYYPDLIHLIRHLRRTHPESKMIKEDPDAPPARYYSCKLCAKIFLDERRLQMHEERHLRKPEFFKCKFCGKKTVSLKNHRIHIRSHLTHKHLENPLKCSHCEEQFIKGYDLHYHLRDVHGIDETWIAERNEQPLAGPLKELQCAVCYKVLASKGNFERHLDYHNTLRCNYCFDYFSALRFLEGHLGFSCDKKKLIGDTEVHPRKIKCHVCYKAFHLQVKLDCHLRTQHNIKVNKETSANRKDFVCDYCFKLFENDYALSNHKIYHRTIGYFGCIYCNRKFNTMTLYRKHKNHHFAQLNVDEPTKCEHCDETFVAFREMIYHMRDAHGDDKEWIILPKESIEEECPICKKVFFNLHRHLDYHEENKCRKCGEYFFSRPDYDNHLCSIESDEETDRRLATDPLAKYEECRFCFKHVTKRDSELKHNRIHSISGAISCRFCSLKFKTVDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVRYGPFTRHMMTVHKSTKKMHYRAFVKAERCVICGDHFPNLHNHYRAHLQNQCQSCKKYFTSSKMFAAHECDKEDSDPTKVFVSDENLSFHINAYVPQDEKDNEKYYGHSDEEDEPEPEEPAPQHELTEVKDIKPGGESQDEESQDEQIVNRDPVQDEVERNLHNMAQSPIISDVLSLYQKQESQTEDDDVVLLTDDDSMDIDVSIPVITID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -