Basic Information

Insect: Hypsopygia costalis
Gene Symbol: -
Assembly: GCA_937001695.2
Location: CAKZJU020000398.1:1217557-1235030[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.96 99 4.9 0.0 3 23 119 139 117 139 0.96

2 16 0.033 3.4 9.5 0.0 2 23 143 165 142 165 0.93

3 16 0.17 17 7.3 0.0 1 20 430 449 430 451 0.95

4 16 0.019 1.9 10.3 1.2 3 23 462 482 461 482 0.97

5 16 3.2 3.2e+02 3.3 0.4 1 20 498 517 498 521 0.74

6 16 0.028 2.9 9.7 1.2 1 23 530 553 530 553 0.93

7 16 0.33 34 6.4 0.4 3 23 632 653 630 653 0.90

8 16 6.3e-05 0.0064 18.1 1.2 1 23 687 709 687 709 0.97

9 16 3.6e-06 0.00036 22.0 2.1 1 23 716 738 716 738 0.98

10 16 0.00011 0.011 17.3 2.3 1 23 743 765 743 765 0.96

11 16 0.00038 0.039 15.6 2.4 1 23 771 793 771 793 0.98

12 16 2.3e-06 0.00023 22.6 1.4 1 23 799 821 799 821 0.98

13 16 0.00042 0.043 15.5 1.7 2 23 828 849 828 849 0.98

14 16 0.00024 0.025 16.2 1.0 2 23 857 879 856 879 0.97

15 16 0.00013 0.014 17.0 0.2 1 23 884 906 884 906 0.97

16 16 0.00057 0.059 15.1 4.5 1 23 912 935 912 935 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.96	99	4.9	0.0	3	23	119	139	117	139	0.96
2	16	0.033	3.4	9.5	0.0	2	23	143	165	142	165	0.93
3	16	0.17	17	7.3	0.0	1	20	430	449	430	451	0.95
4	16	0.019	1.9	10.3	1.2	3	23	462	482	461	482	0.97
5	16	3.2	3.2e+02	3.3	0.4	1	20	498	517	498	521	0.74
6	16	0.028	2.9	9.7	1.2	1	23	530	553	530	553	0.93
7	16	0.33	34	6.4	0.4	3	23	632	653	630	653	0.90
8	16	6.3e-05	0.0064	18.1	1.2	1	23	687	709	687	709	0.97
9	16	3.6e-06	0.00036	22.0	2.1	1	23	716	738	716	738	0.98
10	16	0.00011	0.011	17.3	2.3	1	23	743	765	743	765	0.96
11	16	0.00038	0.039	15.6	2.4	1	23	771	793	771	793	0.98
12	16	2.3e-06	0.00023	22.6	1.4	1	23	799	821	799	821	0.98
13	16	0.00042	0.043	15.5	1.7	2	23	828	849	828	849	0.98
14	16	0.00024	0.025	16.2	1.0	2	23	857	879	856	879	0.97
15	16	0.00013	0.014	17.0	0.2	1	23	884	906	884	906	0.97
16	16	0.00057	0.059	15.1	4.5	1	23	912	935	912	935	0.98

Sequence Information

Coding Sequence: ATGTCTTCGGACGATTCGGAGGACGAACCACTGTCGATTTTAGCAACGGCTAAAAAGACAGACCCTGAAAAATTCGTTGAGCAGATTAGTTCAGTTGAGGAAGACTATGAGccaaagaaaaagaagaaaaagaaaaaacattctTCTATACAGAAACTGCCTGTGAATATAAAAATGGTTTCAAGAGGAAAAAGAGTAATGGTACCAAAGGTTATTGAGAGGCCTACTGATGTTTGGCTTTACATGAAAGATTTGAATCCTGCTGGACCATATAGCTGCTTGCTGTGCTCTGAATGGTTCATAAATCGGCCAAAGATGATTGTACACTATGTATTGAatcacaaaaaagatttttgtggTATATGTCGATATTTTGTGCCTGATCGAGAGGCATGGATTGAACATATGAATTTCCACACTCCCTGGCCATGTTCACAATGTGTTGAGAATTTTCCAACAGAAGTGGACTTACGACAGCATCTTAGCCAAATTCACCAGCTGGTTCACTGCCGTCTGTGTCACTTCAGGGTTCCTGATGATGATCATTACAATACCCATTTATTCCAAAAACACAATGTTACGAATGTCTCTTGCAAAGATGAAGATACTCCATGGGAACTTGAATATGAAGGCGCCACTAAGTTTCTATGCCTCCTATGCTCAAAATCAAACATTTTAGTATCAACTTTCTTCAATCATTACATGGGTTACCATCACTTTACTTTAAAATgttttactaattttatttcTGGCAGAGATCCGCCATTTGCTATATTTGGCGTTTCAGTCAGTTCTCAGTTTATTGATGGCCAATTGAAAACTCAAGAAAGATTTGGTTATGTGGACTTAGAAAAGCCACCAGATCAGGAAGTTGACAATGCTGAATCTCATCCTTTGCTGAATGTCCTTATACCAGAGTTGAAAACTGAAGTTGTCAGTGACAATGAAGACAGTAAACCTCTGGATGCTATCACTGAAGATTCTGCGAATGATAAAACAAATGAGAaggaaaatgaaattataaaaacctATGAAGGAGATGAAGACTTTGATGTAACTCTCATGGAGTTAATAGTTTTGCAAAAAAGCTGTTTTGATTATGTCAAACGAACATTAGTTGACATAAATTCCAATATTGTACCTGAGATTTCTGATATAGATTATGAGTCTCCAAAGGATGAATTTGTTAGTGAAGTTACCTGTGGACTGTGCAATACAAAACATCATACAGCTTATCATTTCATAAATCACATGGGAAAAATGCACTCTGTTAAATCAGTTCCTATATACTCTTGCAGAGTATGTGCTGCGAATTTCGACAGTCAACCAGAATTAGAAGCTCATATTGCTGAAGAATTGGCGGATTTTGATGACTTGTGGCTCTGTCAATTTTGTGATAAGGAATTCGATAATCGAGAAGCAACTAGAAGACATTTGACAAATCACGTTCAGGTTATGGAGTTTGATAACTGCTTTAGTCCGCATCTCGGCTTCAAGTGTAAGTATTGCCCGATGCTGTTTTGGAATGAAACGGATAGAGAGACTCATCAAGTGGGCATGCATATGGAGAAACATAAAGAAAAGTATTACAAATGTGAACCATGTTCTGAAACATTTAGTGACAAGGTCTGGTTTATTCACCATTACATAGAAAAGCACCAAGCATCGGATTCTCTTGCACCAACATATCTTTTGAAATGCTGCATCTGCTGTCACGTCATGCCAACTGTGACTGAGATGAGGTCCCATTTTGACAAGGAGCACCCTGAAGCCAGGAAGGTCTTCTGTTCCTTAGACAATTGCCTCTATAAGCCACTTAGTCAAAGGAAATCTTTTAAGATACATTTAAAAGCAGTTCACGTCCCAGGTAACCGCGTGGAGCGCGCGGTGAACTGCGCGATGTGTGGGCGCGAGTTTCCTAGCTCTCGCGCGTGCAGCACGCACATGGCGCAGGTGCACGGCCCCGGCAAGTTCAAGTGTAAGCTGTGTCGGGAAGTGATGCACACCATGGACGAGAGGAAGCTGCATTACCTGATCCGCCACCCCGGCCGGCATCCGTTCGAGTGCGGCGAATGCGGCAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCACAAACAGGAACACGCGCCCAACCAACAGAACTACACGTGCACCTACTGTGGGAAGATATTTAAGAAGCGTGACTCGTTCCGCGAGCACCTGCAGATCCACGAGGGTCCTCGCCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCGAACATGCTGCGGCACGAGCGCAGGCACACCGGCGAACGACCCTACGCCTGCCCGCACTGTCCGCGAACGTTCGCCGACAAGGGCGCGTGTACGTCGCACACGAGaactCACTCAAAGGAGTcttcgtatgcttgtctatacTGCGGTCAGACTTTTGTACAGAAGTCGAAACTCACTTATCACATAAGAAAACATACAGGGGAAAatcTGGAGACTTGCTCCATTTGTTCGAAACTCTTCACAAGCGCGTGCGCACTGCGGGAGCATATGAAGATACATGAAACAAAGAAAGGGATTACTAAGTGTCCACTTTGTGATAAAAGCTACCAAGACGAGCGGTACATGCTGCGCCACCTGCGCACGACTCACTCCCGCACCAACCACAACTGCCCGCTCTGCCCCAAGGTGGTCACCACGCCCGGCAGCCTGCGCTATCACGTCTTGACACACAGCAAAGTCAACACTTACCGGTGTAAAATGTGTACAAAAACGTTTGAATTCAAAAAGACAGTCATAAAACATCTCCGCAAACGACACAGCATCAAAGAAGGGGATATTACCATAAAGGACCTCTATGAAAGACTGGACCCAAGGGAATGCAAGCTAGGACTTGACGAAGACGTAATGACCAGCATATACGGACCCCCGAGAACAACTGATGACGTTTTAATTGGAGACTACGTAACATTAGCCAAAAACCTCGATGTACAGAataaacctgatgatgatgatgcatcgGATTCGAATGATGATCAGTCTGAtgatggaaataaaattaatgaggATGATGATGTTGGGATGAAAATTAAAGAAGAACCGAGTGATAGTGATGAGTTGGAACCGACTGATTTTGTTAGTGTTAAGATTGAACCGGTAGATGATGCCCAAGATGAAGGTGTAGACAGTTAG
Protein Sequence: MSSDDSEDEPLSILATAKKTDPEKFVEQISSVEEDYEPKKKKKKKKHSSIQKLPVNIKMVSRGKRVMVPKVIERPTDVWLYMKDLNPAGPYSCLLCSEWFINRPKMIVHYVLNHKKDFCGICRYFVPDREAWIEHMNFHTPWPCSQCVENFPTEVDLRQHLSQIHQLVHCRLCHFRVPDDDHYNTHLFQKHNVTNVSCKDEDTPWELEYEGATKFLCLLCSKSNILVSTFFNHYMGYHHFTLKCFTNFISGRDPPFAIFGVSVSSQFIDGQLKTQERFGYVDLEKPPDQEVDNAESHPLLNVLIPELKTEVVSDNEDSKPLDAITEDSANDKTNEKENEIIKTYEGDEDFDVTLMELIVLQKSCFDYVKRTLVDINSNIVPEISDIDYESPKDEFVSEVTCGLCNTKHHTAYHFINHMGKMHSVKSVPIYSCRVCAANFDSQPELEAHIAEELADFDDLWLCQFCDKEFDNREATRRHLTNHVQVMEFDNCFSPHLGFKCKYCPMLFWNETDRETHQVGMHMEKHKEKYYKCEPCSETFSDKVWFIHHYIEKHQASDSLAPTYLLKCCICCHVMPTVTEMRSHFDKEHPEARKVFCSLDNCLYKPLSQRKSFKIHLKAVHVPGNRVERAVNCAMCGREFPSSRACSTHMAQVHGPGKFKCKLCREVMHTMDERKLHYLIRHPGRHPFECGECGKSFQYKSSLYMHKQEHAPNQQNYTCTYCGKIFKKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTSHTRTHSKESSYACLYCGQTFVQKSKLTYHIRKHTGENLETCSICSKLFTSACALREHMKIHETKKGITKCPLCDKSYQDERYMLRHLRTTHSRTNHNCPLCPKVVTTPGSLRYHVLTHSKVNTYRCKMCTKTFEFKKTVIKHLRKRHSIKEGDITIKDLYERLDPRECKLGLDEDVMTSIYGPPRTTDDVLIGDYVTLAKNLDVQNKPDDDDASDSNDDQSDDGNKINEDDDVGMKIKEEPSDSDELEPTDFVSVKIEPVDDAQDEGVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -