Hcos016848.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000305.1:109340-114476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0023 0.24 13.1 6.0 1 23 174 197 174 197 0.97 2 18 0.00016 0.016 16.8 2.1 1 23 206 229 206 229 0.96 3 18 0.039 4 9.3 0.8 2 23 242 264 242 264 0.97 4 18 0.00014 0.014 17.0 1.7 1 23 273 296 273 296 0.98 5 18 0.00014 0.014 17.0 1.3 1 23 308 331 308 331 0.97 6 18 0.00015 0.015 16.9 0.9 2 23 360 382 359 382 0.97 7 18 0.0047 0.48 12.2 2.8 2 23 392 414 391 414 0.96 8 18 0.048 4.9 9.0 0.5 2 19 419 436 418 439 0.92 9 18 0.00072 0.073 14.8 0.5 2 21 444 463 443 466 0.94 10 18 0.02 2.1 10.2 1.0 3 23 476 497 474 497 0.95 11 18 9.2e-06 0.00095 20.7 2.5 1 23 502 525 502 525 0.94 12 18 0.0052 0.54 12.0 0.2 2 23 537 559 536 559 0.96 13 18 0.00067 0.068 14.9 1.1 1 23 583 606 583 607 0.94 14 18 7.9 8.1e+02 2.0 0.7 2 23 613 634 612 634 0.80 15 18 0.0041 0.42 12.4 1.4 2 23 638 659 637 659 0.97 16 18 8.6 8.8e+02 1.9 1.2 3 23 667 689 665 689 0.91 17 18 0.016 1.6 10.5 0.1 1 23 725 747 725 747 0.97 18 18 0.23 24 6.8 2.0 1 23 753 776 753 776 0.96
Sequence Information
- Coding Sequence
- atgtcaataaaaaaagaaaatgtaaaaataaaaaaagaagatataaaaataaaaaaggaagatgttaaaataaagaaagaagatgtaaatttaaaaacagAAGATGGAGTAGCTGTCAAAGAAGAACGAAGAGATCCCACTTCGTTCTTGCCAGAAGAGCCGATGACATATGAACTCAAACAAAAGaacaagaagaaaaaaaagaaaaaacagcaAGAAGACCCTTTCAAAGATTTAGAGGAGAAACCTGATGGAATATTGGAGCCAACACTTGAAATGAATTTTGATGCAGAAGTTAATATTAAAGCAGAAAATATAGAAGTGGAATTAGATTTTAATGATtTTGCGACCAACGGCGCCCTCATGGTGGAAGGCCCAAACAGCGAAGATAGTCAAGAGCCAGAAGTAAAAATCGAGCCACAAAGTCACGAAGCTGTTTTATTAACTTTCGAAAGTATCATCAACGAACAAGCACTCTATGATTACAACCCGGGTGTGACCGTAGAAAACGCACCGACCCACGTCTGCAAAATCTGCCATCTAGTCTTTCAATCaaacaaaacattaaaaatgCATCAAAAGAGAaaacacaaaatattcagaaagTACTTTCAACATATATGCGATCATTGCGGAATGTCCTATGAAGTGAAGAATAGTCTAATCGCTCATATGAAACGGAAGCATGGACCGGACTCGAAGCCCGATGACAGGGAAGAAAGAACTTGTGATGTCTGTGCGCTAGTCTTTAAAGGAATGACTAGATTAAGAATGCATATGAGAAGGAAGCACGGCTCATTTGAAGATTCATTCAAATATGAGTGCAAAGAATGCGGACTGACTTATGATAAACATAGAAGTTTAGCGGTGCATATGCAACGAAAACATTCAGTCATAAAGAAACCAATAGTAAACCAGTGGTATAATTGTCCATTCTGCccaaaaatattcactaaaagaGAAACGTACGCGAGACACGTGCAGAGAAAACATAAAGTTAACGAAGATAAACTCACTGATGAGATGAAAGAGAAAATTGTGggtgatttaaataaaaacgaagCGACAGGAGAAATAACCTGTAAAGAGTGCCCTCTAGTCTTTTCATCTATGAATTTCTTAAAATTGCACATGAGGAGAAAGCATAATGCTCTTAAAGAGGATTTTAGACTTAAATGTAGAATTTGCCATTTATCATATGATAAAATTGAAAGCCTTAAAAGGCATGTAAGAAGGAAGCACGACAAAGCATCATACTGTGAAGTGTGTAATAAACAATTCGATACTAGGGAGATGTACTTGAACCATTCCcatgttaaagttattaaggAATGCAATATTTGTGGGTTGATATTTGCATCACAAGGTGGTTTAGCGAAACATTTACGGTGTACGCACAAATTGGACTCTCCGAAGACTATATTCTGTAGTATATGCAACGAAGGTTTCCACGACAAGCGACAGTTGAAACCGCATTTAATGAAAGTGCATTTGAAAGCATCATATACATGCAAGTATTGTGGTAAAGTTTTCAAAGCGAAAGAAAGTTATAGACGGCACATTCTATTTAAGCATCCGAATAATGTCGTTGCCAGCAGCCAGTTGCAAAAGTGTGATCAATGTTCTGCTGGCTTCGTAGACGAAATCGAGCTGTGTAAACATATTAATATAGTTCATAGGAACGCTACGGATATCTCCGATGTAAATTTACCAATTGTGAAGAAGGAGGAGGATGTCAAATCGTTATTTCAGTGCACAAAGTGTCCAGAAACGTACCCGATGTGGGATCAATTGCGGTTGCATTATGAGCAAAATCATCATATCGCTGCCGAAACTCAGTGCCAAGTATGCGGTATGATTGTACCTGGAATAGAATTACAGAAACATATTAAAAACTTCCACCAAGCATCCGAATGTAGTTATTGTGAGTTTAAGACAACAAATCGAGCGAGCATGACTCAACATATGTTGAGACATAAAAATGCAACAACAATACATTGCGATTATGTTGGTTGTCGATACAAAACTTATTATCCGCAAGCGATGCAGAAGCATAAGGAGAAGCACGCAGAACTCGGGGTTAAGTTACAATGTACGAAGTGTCCGTTCCAGTCGATGAATAAGTACATATTGAAATATCACGAAGAAGCTCATTTTACTGGAAAGAAGAGGTATGTGTGTGATCAATGTGATTATGCTACAATTTTGCCGGCTAACTTGGTGCAACATAAATATAAGCATTCCGTAGAGAAACGGTTCAAGTGTGAAGTTTGTCCGTTTGCAACGAAGTACAATACATCGCTACGGTTCCACGTCAAGAAGAAACACTGTGATCTCCCTTCATTTagttaa
- Protein Sequence
- MSIKKENVKIKKEDIKIKKEDVKIKKEDVNLKTEDGVAVKEERRDPTSFLPEEPMTYELKQKNKKKKKKKQQEDPFKDLEEKPDGILEPTLEMNFDAEVNIKAENIEVELDFNDFATNGALMVEGPNSEDSQEPEVKIEPQSHEAVLLTFESIINEQALYDYNPGVTVENAPTHVCKICHLVFQSNKTLKMHQKRKHKIFRKYFQHICDHCGMSYEVKNSLIAHMKRKHGPDSKPDDREERTCDVCALVFKGMTRLRMHMRRKHGSFEDSFKYECKECGLTYDKHRSLAVHMQRKHSVIKKPIVNQWYNCPFCPKIFTKRETYARHVQRKHKVNEDKLTDEMKEKIVGDLNKNEATGEITCKECPLVFSSMNFLKLHMRRKHNALKEDFRLKCRICHLSYDKIESLKRHVRRKHDKASYCEVCNKQFDTREMYLNHSHVKVIKECNICGLIFASQGGLAKHLRCTHKLDSPKTIFCSICNEGFHDKRQLKPHLMKVHLKASYTCKYCGKVFKAKESYRRHILFKHPNNVVASSQLQKCDQCSAGFVDEIELCKHINIVHRNATDISDVNLPIVKKEEDVKSLFQCTKCPETYPMWDQLRLHYEQNHHIAAETQCQVCGMIVPGIELQKHIKNFHQASECSYCEFKTTNRASMTQHMLRHKNATTIHCDYVGCRYKTYYPQAMQKHKEKHAELGVKLQCTKCPFQSMNKYILKYHEEAHFTGKKRYVCDQCDYATILPANLVQHKYKHSVEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -