Basic Information

Insect: Hypsopygia costalis
Gene Symbol: -
Assembly: GCA_937001695.2
Location: CAKZJU020000499.1:762666-778377[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.1e-05 0.0083 17.7 3.2 1 20 227 246 227 249 0.94

2 9 9.5e-05 0.0097 17.5 1.7 1 23 255 277 255 277 0.99

3 9 3.2e-06 0.00032 22.2 1.7 1 23 283 305 283 305 0.98

4 9 3.6e-06 0.00036 22.0 0.8 1 23 311 333 311 333 0.98

5 9 9.2e-06 0.00095 20.7 0.1 1 23 339 361 339 361 0.95

6 9 2e-06 0.00021 22.8 0.7 1 23 367 389 367 389 0.98

7 9 0.00031 0.032 15.9 4.9 1 23 395 417 395 417 0.98

8 9 0.00062 0.063 15.0 1.7 5 23 426 444 424 444 0.93

9 9 2.5e-05 0.0026 19.3 5.5 1 23 450 473 450 473 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.1e-05	0.0083	17.7	3.2	1	20	227	246	227	249	0.94
2	9	9.5e-05	0.0097	17.5	1.7	1	23	255	277	255	277	0.99
3	9	3.2e-06	0.00032	22.2	1.7	1	23	283	305	283	305	0.98
4	9	3.6e-06	0.00036	22.0	0.8	1	23	311	333	311	333	0.98
5	9	9.2e-06	0.00095	20.7	0.1	1	23	339	361	339	361	0.95
6	9	2e-06	0.00021	22.8	0.7	1	23	367	389	367	389	0.98
7	9	0.00031	0.032	15.9	4.9	1	23	395	417	395	417	0.98
8	9	0.00062	0.063	15.0	1.7	5	23	426	444	424	444	0.93
9	9	2.5e-05	0.0026	19.3	5.5	1	23	450	473	450	473	0.97

Sequence Information

Coding Sequence: ATGGATTTCGCACAAATATGTCGAATTTGCTTGGaatcaaataaacaaacttttgATATATTTACTTGTTACAACGCTAAAAGGGAGACTTTATATTGTGAAATGATATCAAATTGCACTAAATTAaagCCCTGCCTAGAGGATGGTCTACCTAGGCTTATTTGTAAGGAATGCTGTAGGCAGCTGAAACGAACGTACGCCTTTAATATACAGTGCGAGAATAGTGACAAAaagctaaagttttatttaaaaacgaaaCCAGCAAACGTACAGACAGGCATAGGAGCTTTATTGGAAGTAAAATATGAAGAGTTGGTTCAAGAAGTGAAGAACGAAAATGGAGTCGACAGTGAGCAATTATTAAATGCTAATAATGGTGAAGCAGTAATACATGGTAACAGAaatgaagaaataataaatgGTGATAAAAGGGAAGATGTAatacatagtaataataatgaaaataaagctgATATAGTTAAAGTTGAAGCCGAATTCAACAATGACGCAGATGACAGTAATTGGGATGCTGATgatgacaattttttatttgatcTTCAAAGAAGTAAGAAAGAAGCGTCTGATAATGAAGAAGCGAAGCCTAAAAAGAAAAGAGGAAGGAAAAAAAGAGTATTTCGGGAGGGGGAGACGGCACCACTACCAGAGAGTAAAACGCCCCACCAGTGTGACATCTGCGGGAAGTTTCTCAGCACTAAAAGTAATTTGACTGCGCACAAGATTTGCCACACCGATTTGCGACCTTATAAATGTTCCGAATGCCCGGCCACGTTCAGGGGGCACAGTGCTTTGTTTCAACATAAAAAAGTTCACACCGGAGAGACTCCTTACCACTGTGAATACTGTCCAAAACGATTCGGCAGGCGGACGGGCCTAATCAATCACATAAGAATGCACACTGGAGAAAAGCTGTACAGTTGTGACATATGTTTCAAAAACTTCGTACAGAGCGCACAGCTGTCGATTCATATGAAGAGACATAAAGGGGATAAACCCTTCCTCTGCCAGGACTGTGGGAAAGGATTCCCCATCAAGGCAGATTTAAAAGTCCACCAACGCATCCATAACGGGGAAAAGCCTTATGCGTGTCATCTGTGCTCGAAGACCTTCGCAACTTCTGGCAACCTGTCCATACATGTACGGATACACAATAAGGAAGTCAGGTATAATTGCAAAGAGTGTCATCGAGGCTTCGTCACCTGCAGCGCTTATAACGTCCACTTAAAACGTCACAAAGGACAAAGAGACTACCACTGCGACTGCGGTAAAACATTTTACACTTCATCGGCTCTCAAACAACACAAGGTCGTCCACACGGGCGAGAAAAAATACCAATGTAAAATATGTGAACGGAAATTCACACAAACCAGCCATTTAAGCAGGCATTTTAAAAGAGATCACATGAAACCTAACGCCCCAGTGCCTTCTTCAGATCATTATAAAGTAGTAATCAAAAATCCTAATAAAGATGTGTTCAATTTGTTAGATAGTATGCCTAAAATTTGCAATGTTATGTCGGGAGTGAAGTGCGAGGACTATTAG
Protein Sequence: MDFAQICRICLESNKQTFDIFTCYNAKRETLYCEMISNCTKLKPCLEDGLPRLICKECCRQLKRTYAFNIQCENSDKKLKFYLKTKPANVQTGIGALLEVKYEELVQEVKNENGVDSEQLLNANNGEAVIHGNRNEEIINGDKREDVIHSNNNENKADIVKVEAEFNNDADDSNWDADDDNFLFDLQRSKKEASDNEEAKPKKKRGRKKRVFREGETAPLPESKTPHQCDICGKFLSTKSNLTAHKICHTDLRPYKCSECPATFRGHSALFQHKKVHTGETPYHCEYCPKRFGRRTGLINHIRMHTGEKLYSCDICFKNFVQSAQLSIHMKRHKGDKPFLCQDCGKGFPIKADLKVHQRIHNGEKPYACHLCSKTFATSGNLSIHVRIHNKEVRYNCKECHRGFVTCSAYNVHLKRHKGQRDYHCDCGKTFYTSSALKQHKVVHTGEKKYQCKICERKFTQTSHLSRHFKRDHMKPNAPVPSSDHYKVVIKNPNKDVFNLLDSMPKICNVMSGVKCEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -