Hcos004985.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000085.1:81251-88253[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.73 75 5.3 3.7 1 23 30 53 30 53 0.94 2 23 0.00059 0.061 15.0 0.1 3 23 128 149 126 149 0.96 3 23 0.00011 0.012 17.3 0.8 1 23 154 177 154 177 0.96 4 23 0.001 0.1 14.3 2.4 1 23 180 203 180 203 0.94 5 23 6e-05 0.0061 18.2 1.1 1 23 209 232 209 233 0.95 6 23 0.0018 0.18 13.5 0.7 2 23 240 262 239 262 0.96 7 23 5.2 5.3e+02 2.6 0.1 1 21 267 287 267 288 0.84 8 23 0.14 14 7.6 0.8 1 23 353 375 353 375 0.98 9 23 0.74 75 5.3 0.0 3 22 402 421 400 423 0.88 10 23 0.82 84 5.1 0.6 3 23 447 468 446 468 0.93 11 23 0.001 0.11 14.3 0.5 3 23 476 497 475 497 0.95 12 23 5.7e-05 0.0059 18.2 1.0 3 23 504 525 503 525 0.97 13 23 0.012 1.3 10.9 2.2 1 23 531 554 531 554 0.97 14 23 0.00068 0.069 14.8 1.5 2 23 561 583 560 583 0.95 15 23 0.14 14 7.6 2.9 1 23 589 611 589 611 0.92 16 23 0.22 23 6.9 1.1 1 23 676 698 676 698 0.97 17 23 2.4 2.4e+02 3.7 0.4 2 23 724 746 723 747 0.92 18 23 0.0032 0.33 12.7 1.0 2 23 769 791 768 791 0.96 19 23 0.00026 0.027 16.1 4.0 3 23 799 820 797 820 0.96 20 23 0.068 6.9 8.5 0.5 3 23 827 848 826 848 0.96 21 23 0.00039 0.04 15.6 2.0 2 23 882 904 881 904 0.95 22 23 0.15 15 7.5 0.5 2 23 911 932 911 932 0.93 23 23 7e-05 0.0072 17.9 1.7 1 23 938 961 938 961 0.96
Sequence Information
- Coding Sequence
- ATGGAACGGCTAAGTAGTATGCGTGGAAACATTCTCACCGTGCTTCGTTATGGTAAACTCCTCCCTTTCAACTGGAATACCAAAGGATTCAGGTGCTTCTACTGCTCTAAACAGATGAAGGACCATGTCACGCTCAGAGCACACACGGAACAGAAACATGACTCTGTAGACTTAGACACGTTTATACCAAAGAGGATCATATCGAAGGATATCCCTATAAAAATTGATGTAACTAATTTAGCCTGCAAACTTTGCCCCGGAACATGCGTAGAGAACCTTGAAAATTTAATCGAACACGTCACAGATACGCATGGTGATCAGTACGATCATACAACAGGCGTGTGTATTTTCCCATTTGCTTTGAAAAAGGACATCATGGCTTGCGTCGTCTGTGGGATTGAGTTCGATAACTTCTCCTCTTTGATGAGTCACATGAATAAGAACCATATAGCTCACGGTTTCATCTGTCAGGTTTGCGGATTAAGTTTTATCAACAATTTCCGCCTCaagaaacatataaataatacacacGACGGACATCGTTGTACTACTTGCGGTAAAGTATTCGAAGCCGCTCATAAGTTAGAAAAACACAGAGTCAGGATTCACGGTCAGGTTAAATTATACGATTGTAATTTGTGCAGTGAAACTTTTGCAAGTAGTTACCAATTGAAAGTTCATATGGGGAAAGTGCACCATGTGGAGAAGTATAGGATCAAATGCGAGTTTTGTCCAAAAGTTTGTACTACAAAAGGGGCTATGTTGCTGCATATTCAATCTTTGCATTCTGATGTGAGATTTGAATGCGATTTGTGTGATTACAAGACTGCTATTAAGTGGCTGATTAAATTGCATAAACGAGAACCTAGAGGTGGCCAGAAACCAGACACTCACTATGAAGAAAAAGAGAAGACTAAACAGATCGTAGAAGAAGTTGCACCGAATCCTGCTAAACCAGCCCTTACGGCTAAAgataaaagaaagataatgagAAACAATGTTGTACAAGTTCTTATAAAAAGTACAGTCATGCCATTCAGATGGCTAAAAAGCTCATATAGATGTTTCTACTGCTACGATATATTCCAAGAAGTTTCAGATCTCAAAAATCATCAGCTCGTGCATAATGGCGATGAAATAAAAGAACAAGCGATGAACAACTATTGGGAGCCAGTAGTTTACGTAGATATATCTTGTTTAGCTTGCAAACTGTGCCCGGAGAAAATTAACGATTTATACGACTTGATAGACCATCTTGTTGCTACACACAGCGTCAGTTACAATAAAGATGTTGGAACGTGTATGGTGGCGTTTAAACTGGACAATTTTTCCGTGAATTGTTTAGCGTGTGGTGTCAGTTTTTATTCTTTCGGACCTCTATTACATCATACGAATAAGGATCATAAAGGAACGTCGGCTATTTTATGTGACATTTGCGGTCAGCATTTCAAAGACGCATACTTTTTGAGATTACATGTAAAGGCTGTCCATGAGAATTCTGTCTTGCTTTGTCCTGAATGCGGCGAGAAATTTGAGAGTAGATATAAGTTGAAGACCCATCAGAAGAATCAGCATGATATAGATAAGCAGTATAAGTGTTTAGTGTGCACACAAACATTCCAGAGCAACTACAAAAGGTCCAGACATATGGTTACGGAACATAAGAATCGTGAAGAGATCAAATGTTTGCATTGCCCCAAGACATTTGTGTTTCGTAGCATGATGATGACACACTTGAGAGATGCTCATCTTAAAGTAAGGAACCACACATGCGGAGTGTGCGGTTTCAAAGCGTTCAATAGCAACAGACTTAAGAACCACATGTACAAACACAGTGGAGAGAAGAATTTCAAATGCAGAAAAGCAAAGGCAGAGAAAAGGAAACAAGAAGAAGATTACGATGCTACATCCTTAACCGAGAAAAAAGTGATAACAGCCAATGAAAAGATTTCATTAATTAGGCAAAATGTCCTTGAAGTTCTGTTGAAGTCGACGGTTCTGCCGTTTCATTGGCTAAAGAGTTCCTACAGATGCTTCTACTGTTATGACGTGTTCCAAGAACCAAAAGATCTCAAATCGCATAACCAGGTTCATGTCACTGATGAGGAAAAAGTAAAAGCTATGCAGAACTACTGGGAGTCATCAGTTTACGTGGATGTTTCAAATATGTCGTGTAAACTCTGTGTAGAAAATATAACAGATTTCTATCAATTAATAGATCATCTTATATTAACTCATCACATGCCATTCAATAAAGATATAGGGATATGTATGAGTCCATTTCAATTAAACAATATATCAGTGCGATGTGTTTTGTGTGATAAAGAGTATAGGACTTTCGGACATTTGCTTGTGCACACTAATAGGGAACACAAAGGTTGTTCGCAGCTGTTGTGTGATATTTGCGGGCAGCACTTTAGGCGTTCGCATAATTTAAGAGACCATTTCAATAAAGAACATGTGAAGCAGGCTGTCGCTTGTCCTATATGTGGGGAGACTGTCGGGAACGTGAACAGAATGCGGACACATATGCGACATTTCCACGATAAGAAATACAAATGCTTTTTATGTACAGATTTGTTTGAGACACACTATAAAAGATCCTTACATATGATGACGGTTCACAAAACTAGGGACGAAGTGAAGTGCGTGCATTGTCCAAAGACTTTCGTCTTCAGGAGCACAATGATGAGGCATGTAAGGGAGACACATTTGCAAGAAAAGAACGCAGTGTGCGGAATTTGCGGATGGAAAGCATTTGGAATACACAGATTGCAAAGACATATGATGAAGCATAGTAATGAACGAAATTTCAAATGTCCTGCATGTGATAAAGCATTTAAAACGAAGAAAACTATGCggcaacattataataatatccaTCAAAAAATTTTAAGAGTTCCAGATGTTATACCGAATATGACaagctaa
- Protein Sequence
- MERLSSMRGNILTVLRYGKLLPFNWNTKGFRCFYCSKQMKDHVTLRAHTEQKHDSVDLDTFIPKRIISKDIPIKIDVTNLACKLCPGTCVENLENLIEHVTDTHGDQYDHTTGVCIFPFALKKDIMACVVCGIEFDNFSSLMSHMNKNHIAHGFICQVCGLSFINNFRLKKHINNTHDGHRCTTCGKVFEAAHKLEKHRVRIHGQVKLYDCNLCSETFASSYQLKVHMGKVHHVEKYRIKCEFCPKVCTTKGAMLLHIQSLHSDVRFECDLCDYKTAIKWLIKLHKREPRGGQKPDTHYEEKEKTKQIVEEVAPNPAKPALTAKDKRKIMRNNVVQVLIKSTVMPFRWLKSSYRCFYCYDIFQEVSDLKNHQLVHNGDEIKEQAMNNYWEPVVYVDISCLACKLCPEKINDLYDLIDHLVATHSVSYNKDVGTCMVAFKLDNFSVNCLACGVSFYSFGPLLHHTNKDHKGTSAILCDICGQHFKDAYFLRLHVKAVHENSVLLCPECGEKFESRYKLKTHQKNQHDIDKQYKCLVCTQTFQSNYKRSRHMVTEHKNREEIKCLHCPKTFVFRSMMMTHLRDAHLKVRNHTCGVCGFKAFNSNRLKNHMYKHSGEKNFKCRKAKAEKRKQEEDYDATSLTEKKVITANEKISLIRQNVLEVLLKSTVLPFHWLKSSYRCFYCYDVFQEPKDLKSHNQVHVTDEEKVKAMQNYWESSVYVDVSNMSCKLCVENITDFYQLIDHLILTHHMPFNKDIGICMSPFQLNNISVRCVLCDKEYRTFGHLLVHTNREHKGCSQLLCDICGQHFRRSHNLRDHFNKEHVKQAVACPICGETVGNVNRMRTHMRHFHDKKYKCFLCTDLFETHYKRSLHMMTVHKTRDEVKCVHCPKTFVFRSTMMRHVRETHLQEKNAVCGICGWKAFGIHRLQRHMMKHSNERNFKCPACDKAFKTKKTMRQHYNNIHQKILRVPDVIPNMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -