Hcos029146.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000597.1:499280-502525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 13 7.7 0.0 1 23 121 144 121 144 0.96 2 18 0.0076 0.77 11.5 0.1 3 21 174 192 172 195 0.90 3 18 6e-05 0.0062 18.1 2.2 1 23 216 238 216 238 0.98 4 18 0.0018 0.18 13.5 0.1 1 23 242 264 242 264 0.98 5 18 0.0027 0.27 13.0 2.4 1 23 269 292 269 292 0.97 6 18 0.0048 0.49 12.2 0.4 3 23 300 321 299 321 0.93 7 18 0.0012 0.12 14.0 1.0 1 23 328 351 328 351 0.97 8 18 7.3e-07 7.4e-05 24.2 1.6 1 23 385 407 385 407 0.99 9 18 0.087 8.9 8.2 2.0 1 15 413 427 413 429 0.86 10 18 0.16 17 7.4 0.1 1 23 490 513 490 513 0.94 11 18 0.027 2.7 9.8 0.1 3 23 543 564 541 564 0.92 12 18 0.00032 0.033 15.9 3.5 1 23 585 607 585 607 0.98 13 18 0.017 1.8 10.4 0.4 1 23 611 633 611 633 0.96 14 18 0.0032 0.32 12.7 2.6 1 23 638 661 638 661 0.97 15 18 0.00012 0.013 17.2 3.2 1 23 692 715 692 715 0.97 16 18 1.1 1.1e+02 4.8 6.9 1 20 721 740 721 743 0.97 17 18 8.3e-07 8.5e-05 24.0 0.9 1 23 749 771 749 771 0.99 18 18 9e-06 0.00092 20.7 4.4 1 23 777 799 777 800 0.95
Sequence Information
- Coding Sequence
- ATGACTGTCGTGACTGTCAACAATCAGTACGTCGAATTTTCTTTCGAAAAGGTTGTTGCCTTTATGAAACTGACTTATGACTTCAGGAAACAATTCACTGTTATCCACCCGTGGGCTGAGCTAGCCCTAGTGTTCCTAATGGTGGTTTCAGATGGTGAAGCATTGGAGCCCAGGGgtGGCGATCAAACTGCTACCGTGAGTAAAAGTACTGGACCTGTAACAAAACCAAAGGTCATTGAGAAACAGAAAGAAGTGATCAGTCGGAGCGTATCTGGGGTGACACGGATTGAAATCATTAGAGAGAGCGCTCTGATTCTCATTCAGTGCACTACAATATGCCCTTTCAAATATTCTAGAATTTTCGTTTGTCTATACTGCGATGACACTTTCATAGACATGCCTCTTTTAGTAGAACATACGAATTCAGTTCACAGCGATGTAAAAGAAATTGAGCTACGCAAACTTCTTATCAATAAAGCTAGAACTGAACCTATCAAAGCAAACGTCGTTGACTTTGGTTGTAAAATTTGCGGTAAAGTAAGTGAAAATTTTGATAGCCTAATAAATCATTTAGTTGACAACCATAACAAAAAGTTAAACGTGAAAAATTACGGCATTATACCGTTCAGAATTAAAGAGAATGAATTTGAATGCGTGCATTGTAATAAAgcgtttattaaatataaacttttgAATATGCACATGAGAGAGCATTATAGAAATTTCTCTTGTGAACAATGCGGTGCGGGATTCATTACAGTTCGTGCTCTAAAAGGTCATTTATTGACTCATAAACTTGGCCAGTTTCCTTGCAGTGATTGCAATAAAGTATTCAAAAGTGAAATTTGTAAAACGGAACATTACAAGACGGCACATATAAAACGtaagagaaatatttgtaaagTGTGTAAGGAGGCTTTTACAAACTATTACCAGAAACTTAGACACATGATCGATGACCACGGCGTCAAGATGCCTGAATACAAATGTAGCTTCTGTCCAAAGGTTTTTATCATGAGTAACCTTTGGAAAACGCACGAGAAAATGACCCATTTGAAATCTGTCACTTATACTTGCGATTTATGCAACTATAAACACCATAATAAAAGCTGTTTGAAAAGACATATGATCTGTCACAGCGACGAGAAAAATTACAAATGTAACGTTTGCAAAAAGGCATATGCTAGAAAGCGGACTTTGAAAGAGCATATGAGAATACATAATAATGACAGACGGTTTGCATGCAATTATTGCGATAAAGCTTTTGTTCAAAAATGCAGTTGGAAAGgtGACGATCCGACCGCCACCATGAATAAACATACTGGACTTGTAACAAAAGCAAATGTCATTGAGAAACCGGTGATCAGTCGGAGCCTATCTAGGGTGACACGGACAGAAATCATTAGAGACAGCGCTGTGACTCTAATACAGTGCACTACAATATGCCCTTTCAAATATTATAGACTTTTCGTTTGTCTCTACTGCGATGACACTTTTATAGACATGCCTCTCTTAGTACAACATACTAATGAAATACACGGTGACGTAAAAGAAATCGAGTTACGTAATGTTCTTATAAAAAAAGCCAAAACTTTACCAGTGAAAGTAAATGTCGTCGATTTTGGTTGTAAAATTTGCGGCGAAGTAACTGAAAATTTTGATGAACTGGTCAATCATTTAGTTAAtagtcacaataaaaaaataaacctaaaaAATTGCGGTGTTATACCATATAGAATTAACGAGAATGATTTCGAATGTGTGCATTGTAAGAAAAAGTTTATTCAGTATAAACTTTTAAATATGCACCTGAGAGAGCATTATATGAACTTCTTCTGTGAACAATGTGGTGCGGGGTTCATTACTGTTCATGCTCTAAAAGGTCATTCACTGACTCATGAACTTGGCCAATTCCCTTGCAGtgattgcaataaagttttcaaAAGTGAAATTTGTAAGACTGATCATTACAAAACGGTACATATAAAACGTAAGAGACATATTTGTACAAGTACAAGCTATTACCCGAAATTGAGACACATGGCCGATGTCCATGCTGTTAAAATCCCTGAATACAAATGCAACTTCTGTCCAAAAGTGTTTAGGATGAGTTCTCATTGGAAATTGCATGAAAAAATGAGTCATTTGAAATCTGCTACATATACCTGCGATATATGCAGCTATAAACATCATAATAAAAGCAGCTTGAAAAGGCATATGGTCTGTCACAGTGATGAAAAGAATTACAAATGTGACGTTTGCAAAAAGGCATACGCTAGACAGCGGACTTTGAGAGAGCATATGAGAATACATAATAATGACTTCAGGTTTGCATGCAATTATTGCGATAAGGCTTTTGTTCAGAAGTGCAGTTTGAAAGGTCATATGAATACGCATCATAGCTATGTAGATCAGACTAAAGCAGATAAAGTGGAGTAG
- Protein Sequence
- MTVVTVNNQYVEFSFEKVVAFMKLTYDFRKQFTVIHPWAELALVFLMVVSDGEALEPRGGDQTATVSKSTGPVTKPKVIEKQKEVISRSVSGVTRIEIIRESALILIQCTTICPFKYSRIFVCLYCDDTFIDMPLLVEHTNSVHSDVKEIELRKLLINKARTEPIKANVVDFGCKICGKVSENFDSLINHLVDNHNKKLNVKNYGIIPFRIKENEFECVHCNKAFIKYKLLNMHMREHYRNFSCEQCGAGFITVRALKGHLLTHKLGQFPCSDCNKVFKSEICKTEHYKTAHIKRKRNICKVCKEAFTNYYQKLRHMIDDHGVKMPEYKCSFCPKVFIMSNLWKTHEKMTHLKSVTYTCDLCNYKHHNKSCLKRHMICHSDEKNYKCNVCKKAYARKRTLKEHMRIHNNDRRFACNYCDKAFVQKCSWKGDDPTATMNKHTGLVTKANVIEKPVISRSLSRVTRTEIIRDSAVTLIQCTTICPFKYYRLFVCLYCDDTFIDMPLLVQHTNEIHGDVKEIELRNVLIKKAKTLPVKVNVVDFGCKICGEVTENFDELVNHLVNSHNKKINLKNCGVIPYRINENDFECVHCKKKFIQYKLLNMHLREHYMNFFCEQCGAGFITVHALKGHSLTHELGQFPCSDCNKVFKSEICKTDHYKTVHIKRKRHICTSTSYYPKLRHMADVHAVKIPEYKCNFCPKVFRMSSHWKLHEKMSHLKSATYTCDICSYKHHNKSSLKRHMVCHSDEKNYKCDVCKKAYARQRTLREHMRIHNNDFRFACNYCDKAFVQKCSLKGHMNTHHSYVDQTKADKVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -