Basic Information

Insect: Hypsopygia costalis
Gene Symbol: -
Assembly: GCA_937001695.2
Location: CAKZJU020000562.1:228797-237156[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.7e-06 0.00089 20.8 2.7 1 23 159 181 159 181 0.98

2 12 0.00068 0.07 14.8 2.5 1 23 186 208 186 208 0.98

3 12 0.00015 0.016 16.9 2.0 3 23 223 243 223 243 0.99

4 12 1.4e-05 0.0014 20.2 2.0 2 23 251 272 250 272 0.95

5 12 0.00032 0.032 15.9 0.2 1 23 278 300 278 300 0.96

6 12 5e-05 0.0052 18.4 3.0 1 23 306 328 306 328 0.97

7 12 3.6e-07 3.7e-05 25.1 1.0 1 23 334 356 334 356 0.96

8 12 0.00072 0.074 14.8 1.8 1 23 362 384 362 384 0.92

9 12 8e-05 0.0082 17.8 0.5 1 23 390 412 390 412 0.95

10 12 0.00036 0.037 15.7 9.6 1 23 418 440 418 440 0.97

11 12 1.4e-06 0.00014 23.3 1.0 1 23 446 468 446 468 0.99

12 12 2.2e-05 0.0022 19.5 1.0 1 23 474 496 474 496 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.7e-06	0.00089	20.8	2.7	1	23	159	181	159	181	0.98
2	12	0.00068	0.07	14.8	2.5	1	23	186	208	186	208	0.98
3	12	0.00015	0.016	16.9	2.0	3	23	223	243	223	243	0.99
4	12	1.4e-05	0.0014	20.2	2.0	2	23	251	272	250	272	0.95
5	12	0.00032	0.032	15.9	0.2	1	23	278	300	278	300	0.96
6	12	5e-05	0.0052	18.4	3.0	1	23	306	328	306	328	0.97
7	12	3.6e-07	3.7e-05	25.1	1.0	1	23	334	356	334	356	0.96
8	12	0.00072	0.074	14.8	1.8	1	23	362	384	362	384	0.92
9	12	8e-05	0.0082	17.8	0.5	1	23	390	412	390	412	0.95
10	12	0.00036	0.037	15.7	9.6	1	23	418	440	418	440	0.97
11	12	1.4e-06	0.00014	23.3	1.0	1	23	446	468	446	468	0.99
12	12	2.2e-05	0.0022	19.5	1.0	1	23	474	496	474	496	0.97

Sequence Information

Coding Sequence: ATGGATATGGTTGATAACAATGTAGATCGCCGATGTCGGACTTGTTTAAACGATTCAGCACACAAAATGTATGATATTTTCACCGAAGTAATGGATTCTATGAATGCTGCTGATATGTTGACGTCATGTACATCAATAATGGTCGATAGAGGTGATGTGCTGTCTAAAAAGCTATGTGGGAGCTGTTACAACTGCCTTGTAAGCTTTTATGACTTCAGAAAGTTAGCTGAAAAAATTGATTATCAAATGAGATGTCAGAGCCAATTTAAGTCCTCCGATGATTTGTATGTGGAAATCAAAATAGAAAACGGCAATGTAGAGAACACTGAAGTGTTAGACACAGACTATaatgatttagaagtaaaagaAGAATATGAAGATCATTCATCTGAGAAAATAGAGACTTGTGATAATTTGCAATTCAGCCAGTATCGAACTAAAGTGAAATCCCGTAAATTAAGTAGTACCGCAAAGTTCAAATGcaacatttgtaataaaaaattcaaacaaaTATCCAGATTAGAACAACACCAACttagacataaaaagaaactgTACAAATGTACACTATGTACTGAATCATTTCAACATTTGTCGAGACTGGCCAAGCATTTAGTTACACACGGGCAAGACGTCAGTAAAGAAGACATAAACCAAAAATTAGGTTGTGATGTTTGTTCTGCTATTTTTAAGTCTAAGCATTCTCTTTCTGCACACATGCGTAAACATGCAGTGAAAGGCAGGGTCTTATCATGTGAAACATGCGGTAAAGTTTTCAAAAAAGTCAGTCATTTGAAGAGGCATGAGACAATTCACGAAGTTAATAGACCATTCAAATGTACTTTATGCCCAAAGTCATTTGCAACAGAGAGTATTCTTACAGATCATGTGAACGCACACAATAAATTGAAGCCTCATGTGTGTCCGATATGTGCAAAAGCCTTTTGTCACGTCTCAACGTTGACTTCCCATATTAAAATTCACAAAAGAGAGAAGCCATATTTATGCCCAACTTGTGGAAAACGTTTTGATTCAAGTACTAATCTGAATCAACATATAAAGAGACATCTAGGTCTTAAGTTGTTTGCTTGTACATCATGTCCAAAGACTTTTGTTAGCAAAGgaGAGTTGAAATCCCATTGTGCTACACATACTGGAGCGCGTCCGTATACTTGTGACCAATGTGGGGCGTCATTCACCAAAGGCAGCTCACTCCGCAAGCACAACATGGCACACATGGGCATCAAGCCCCATCACTGTGACAAATGCACAATGAAGTTTACAAGTAAGGACCATTTAAAACGGCATTACCGTATCCACACTGGGGAAAAGCCTTATAAATGCGATCTGTGCGAACGTGCGTTCACGCAGAGCAACGACCTCGTCAAACATAGACGTATGCACCTAGGagataaaatttataaATGTAGCATATGCACGGAGAGTTTTCGTTTGAAAACCGAGCTGCGTCAGCACATATCAGAACACATGCTGTCGGACAAACTTCAAGCCTTATCAGTCCACAAGCCAGCCGAGGACGCTTCCAACAACAACATAGACGTGAAACCTGTGGAACTAAGTACTAAAACAGACATTATTAATGATTCAATTGTTTCAAGTGATGTTTAA
Protein Sequence: MDMVDNNVDRRCRTCLNDSAHKMYDIFTEVMDSMNAADMLTSCTSIMVDRGDVLSKKLCGSCYNCLVSFYDFRKLAEKIDYQMRCQSQFKSSDDLYVEIKIENGNVENTEVLDTDYNDLEVKEEYEDHSSEKIETCDNLQFSQYRTKVKSRKLSSTAKFKCNICNKKFKQISRLEQHQLRHKKKLYKCTLCTESFQHLSRLAKHLVTHGQDVSKEDINQKLGCDVCSAIFKSKHSLSAHMRKHAVKGRVLSCETCGKVFKKVSHLKRHETIHEVNRPFKCTLCPKSFATESILTDHVNAHNKLKPHVCPICAKAFCHVSTLTSHIKIHKREKPYLCPTCGKRFDSSTNLNQHIKRHLGLKLFACTSCPKTFVSKGELKSHCATHTGARPYTCDQCGASFTKGSSLRKHNMAHMGIKPHHCDKCTMKFTSKDHLKRHYRIHTGEKPYKCDLCERAFTQSNDLVKHRRMHLGDKIYKCSICTESFRLKTELRQHISEHMLSDKLQALSVHKPAEDASNNNIDVKPVELSTKTDIINDSIVSSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -