Basic Information

Insect: Hypsopygia costalis
Gene Symbol: -
Assembly: GCA_937001695.2
Location: CAKZJU020000353.1:1577142-1591474[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 11 7.9 0.9 2 22 144 164 144 164 0.95

2 12 0.00061 0.063 15.0 0.1 2 23 176 198 175 198 0.95

3 12 0.0024 0.25 13.1 0.5 1 23 236 258 236 258 0.95

4 12 0.023 2.3 10.0 0.2 1 20 355 374 355 376 0.89

5 12 0.00047 0.048 15.3 1.5 1 23 384 407 384 407 0.97

6 12 3.2e-06 0.00033 22.2 1.7 1 23 428 450 428 450 0.99

7 12 3.4e-07 3.5e-05 25.2 2.8 1 23 455 477 455 477 0.99

8 12 1.3e-07 1.3e-05 26.5 0.8 3 23 490 510 489 510 0.98

9 12 3.3e-05 0.0034 19.0 3.2 1 23 516 538 516 538 0.99

10 12 7.5e-07 7.7e-05 24.1 1.6 2 23 545 566 544 566 0.96

11 12 4.8e-08 4.9e-06 27.9 1.5 1 23 572 594 572 594 0.99

12 12 0.0013 0.13 13.9 0.6 1 23 600 622 600 622 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	11	7.9	0.9	2	22	144	164	144	164	0.95
2	12	0.00061	0.063	15.0	0.1	2	23	176	198	175	198	0.95
3	12	0.0024	0.25	13.1	0.5	1	23	236	258	236	258	0.95
4	12	0.023	2.3	10.0	0.2	1	20	355	374	355	376	0.89
5	12	0.00047	0.048	15.3	1.5	1	23	384	407	384	407	0.97
6	12	3.2e-06	0.00033	22.2	1.7	1	23	428	450	428	450	0.99
7	12	3.4e-07	3.5e-05	25.2	2.8	1	23	455	477	455	477	0.99
8	12	1.3e-07	1.3e-05	26.5	0.8	3	23	490	510	489	510	0.98
9	12	3.3e-05	0.0034	19.0	3.2	1	23	516	538	516	538	0.99
10	12	7.5e-07	7.7e-05	24.1	1.6	2	23	545	566	544	566	0.96
11	12	4.8e-08	4.9e-06	27.9	1.5	1	23	572	594	572	594	0.99
12	12	0.0013	0.13	13.9	0.6	1	23	600	622	600	622	0.98

Sequence Information

Coding Sequence: ATGGCTTCTATTGATACAGAGATAAAGATTGAAAATATTTGTAGAACTTGCATGTCTAAAGAAGATGATTTACAGTCAATATTTGATCTTTGTTACGATACAATGAggcttgattttattatatctacAATAACCGGAGTTCAGATTGAACAAGGAGATGGATTGCCGTCAACTGTTTGCCGTAGTTGTGAAGAAAAAGCTGCTAATGCATttgaatttaagaaaaaatcaCAAGAAGTTGATGTTACATTGCGAGATTTATGTAAAAAAGAAGAGGAAGTGAAACATTATGAGTACCAAaatgatgatgatgtgaaaACTGAGGAGTATGTGACTGATGATCAGCATAACTATATGGAGTTCGGATTAGAGGATTTAAATGATATAGaTATGGTAAAAAATGAATGTGAACAATATAATCAGCCACCGCAATGCAAAAATTGCGCATTACTATTTAACACATGTGAAGAATTACAGGACCACTTAAGAATGAAATGTGTTAAATttGAAATCGACGAGTCTAGTTATTGTCCTCTTTGTGGTGTTGATTATTATGACACTGTTTCTCTAACTAAACATATGAGAGAGAGTCATGCAGAATTAATGGGCCCAAAGAGAAAAGGAAGACCTAGAAAAATACTAACAAGTACAATAATCAAATTAGCTCAAAACGGTTTCCATATTAAGAACATTCCAGAAAAGAGACATAGCTGCACGTTTTGTGATGAAGAATTTAAAACCAAAGAAGATGTAGCAATTCATGTAATGGACCATAAAGatacaaaattattttgctGCCTATTATGTAAGAAGTACTACCTCGACAAGATCTTTTTTGATCAGCACGTTTGCAGTGAAGAAAGAGATGATCAAAATAAGccAGGGATAGAGGACAAAAATGGGGTCAATTATTTAAGTGAAACAACATTACAAGAACTACTGGTTGCAGATAACGAACTGAAACAAGATTCCTTGCTCCAAGTGTGTAGAGTTTGCAGTGGGGTGTTCATGTCGGAAGGAGACATTGTCCGCCATAATGATATGGAACATCCGGAGCTGTCTTTTCGTTGTAACCTATGTAACAAGATTTTCGCTTCACTGAAGTCTGCTGGCCGCCATAGAAGTATATGTAAACAAATTGAACGCAAGCATAGGTGTAATACTTGCGGACTACAATTTGCTTACGAAATATCACTCAATAAACATATATTGCGGTACCACGAGGGTCAGAGTGTATCTGTTAAATTTATGGATACAAAGGCACGGCAGCAAAACGCAGAGTACAAATGTGACAATTGTGATAAATTGTTCTATAGAAAAGACTTACTCATAAAACATACTAGAGTTCATTCCGAAAAATATTACGAGTGTGATGTATGTAAAAAGAAGTTCAACAGAAGTGACAACTTACGTTCGCATAAACGGACACATGAGCCCCGTGAAAAAACAAAGGCGAACGCATCCCTTTGTCTTTACTGCGGACGCAGCTTCAATAATTCCTCCAATCTTATCGTCCATATGCGTCGGCACACTGGAGAAAAGCCATACAAATGTGACTTTTGCGGCAAGGgatttCCACGATCCTCAGACCTCCAGTGTCATAGAAGATCTCACACAGGCGAGAAGCCATGTGTTTGTGGTGTATGTGGAAAAGGTTTCTCACGTAGCAACAAATTGTCGCGCCACATGCGCGTGCATACAGGAATCAAGCCTTATAAATGCACGTACTGCGATAAGGCATTTTCTCAGAGCAACGACTTGACGTTGCATATTAGGCGGCACACTGGCGACAAACCATACATTTGCGAGATCTGCGGGGACAGATTCATACAGGGGACTGCTTTACATAATCATAGACGCACCCATGGCCACTACCCGCCCTCTTCTTCGGATACTCATATACAGATACAAGGGATTACGTACACAGTCCAAAATATTACGCCTCAGGAAATAAATCAATAG
Protein Sequence: MASIDTEIKIENICRTCMSKEDDLQSIFDLCYDTMRLDFIISTITGVQIEQGDGLPSTVCRSCEEKAANAFEFKKKSQEVDVTLRDLCKKEEEVKHYEYQNDDDVKTEEYVTDDQHNYMEFGLEDLNDIDMVKNECEQYNQPPQCKNCALLFNTCEELQDHLRMKCVKFEIDESSYCPLCGVDYYDTVSLTKHMRESHAELMGPKRKGRPRKILTSTIIKLAQNGFHIKNIPEKRHSCTFCDEEFKTKEDVAIHVMDHKDTKLFCCLLCKKYYLDKIFFDQHVCSEERDDQNKPGIEDKNGVNYLSETTLQELLVADNELKQDSLLQVCRVCSGVFMSEGDIVRHNDMEHPELSFRCNLCNKIFASLKSAGRHRSICKQIERKHRCNTCGLQFAYEISLNKHILRYHEGQSVSVKFMDTKARQQNAEYKCDNCDKLFYRKDLLIKHTRVHSEKYYECDVCKKKFNRSDNLRSHKRTHEPREKTKANASLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCGVCGKGFSRSNKLSRHMRVHTGIKPYKCTYCDKAFSQSNDLTLHIRRHTGDKPYICEICGDRFIQGTALHNHRRTHGHYPPSSSDTHIQIQGITYTVQNITPQEINQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -