Hcos039702.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020001918.1:84898-91626[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00097 0.099 14.3 0.2 1 23 335 357 335 357 0.97 2 11 2e-05 0.0021 19.6 0.6 1 23 393 415 393 415 0.98 3 11 2.3e-05 0.0024 19.4 3.6 1 23 421 443 421 443 0.99 4 11 0.00013 0.013 17.1 2.2 1 23 449 471 449 471 0.97 5 11 6.8e-05 0.007 18.0 0.6 1 23 477 499 477 499 0.99 6 11 3.8e-05 0.0039 18.8 2.0 1 23 505 527 505 527 0.99 7 11 1.4e-05 0.0014 20.2 0.5 1 23 533 555 533 555 0.99 8 11 2e-05 0.0021 19.6 2.2 1 23 561 583 561 583 0.99 9 11 3.3e-05 0.0034 19.0 3.8 1 23 589 611 589 611 0.97 10 11 5.1e-06 0.00052 21.5 2.4 1 23 617 639 617 639 0.99 11 11 1.2e-06 0.00012 23.5 2.3 1 23 645 667 645 667 0.97
Sequence Information
- Coding Sequence
- ATGTCTTTGAACACGGCGTGCAGAGTTTGCCTGGCGATGGACGTGCCTGTGCACATTATAGCCGGCAGCCCGctgcaaaatatatatgaaaagcTGACTGGTATATCTTTAAATACAGCGCACCGGCCTGTGGTAGCATGCTATATGTGTTACTATCAGCTGAGGAAGAGCCACAGTCTGATGGTCAGGTCTTTGAAGGCCGAGGATGTGCTCACACATTTTCTACACAGCGGTGATGCAGTACAAGGAAAATCAATGAGCATGTTAAACCAGAAAGCATATCAACTAAGAAATACTCTAAGCGTAACTCCAACTAAAATCATCGACGTTACGAGCACTGATGAAGATACAGAGGTACAAGTTAAAAAAGAGAAGAGCTCTGATGACAATTTGAtagaaattgaaattaaaaaagagCCAATGACATCCGAGTGTATAGATGACGAGGAGATACTCCTACGAAGTGCGGATCGTATGAAGTTAGAGCCATCAGATGATAAAGAGGATGCGAGTAGAAAAGTACTGGAAAATATTAAGGGTAATAGTAGGACAGCTGAAGGAGATCTAAAACAAGAAGAGTTACATCTTTCTAACTGTGCTACTCACGTACAAGATATTAGTACCGAAGAAatgatacataataaaaacaagATGTTATCCTTACCTCCTCCAACAGTTGTTTCTGTAGACTGGCAAAGAGAAGTAAATGTTAAGAGCAACGCATTTGAAGAGCCAGCTTCCAGCGCTCCCGTTGATACACGTGAAAGCACAGTGTTACCGCTCAGAAGATTCTCAACTAAGATATGGAAACCATGCAGCACAGTCAAAAAGAATGAAATACCAAGACGATATTGCAATATTCGTACATACAAGACAAAAAGAACAGCACCGTATTCCGACACTACTGTTAACAAAAGTGATGTAACTATTTTTGATGGTGATGCCTGCTCTAGTACTAACACAGATGTTGGCAACACTAATAGTGAGCATTCGAGGAGAATGTTTGTCTGCGACAATTGCGGTgatgtatttgatgataaaCATCTCCTAATAGAACATATTGAACAACATGTGACTGGCAAAGAGGCGACCTCGCAACAATGTGGCATGTTGCGTGAACAAAAGTATAGTACAACAGGAGTAGTGAAAGGACTTGCAGACAATGGGATGAATCgttttgaatgtgagatatgtaaagctaaatttagtcaaaattataaattacaaggTCACTTAAGAATTCACACTGGTGAAataccttatgaatgtgagatatgtaaagttaaatTTACTTACAAGTGCAATTTAAAGTCACATTTGAGAATTCATACTGGTGaaaaaccttatgaatgtgagatatgtaaagttagatttagtcacaATTATAAGTTAGAGAAACATTTCATAATTCACACTGGTCTGAAACCTTATGagtgtgagatatgtaaagttagattgaCAGAGAAGAGTACTTTAAAAGCTCACTTAAGAAAACACACTGGAGAGAAACCTTATAAATGTGATATatgtgaaattagattttctcTTAAGAAAAGCTTACGGTATCATTTAAAAACGCACACTggtgagaaaccttatgaatgtgagatatgcaAATTTAGATTTATTCAGCTCGGTTCTTTAAAATCTCACTTGAGGATACACACTggtgagaaaccttatgaatgcgatacatgtaaagttagatttggTCAGAAGGCGCATTTAAATTCCCACTTAAGGACTCACACTGGTGAAAAACCTTATGATTGTGAAATATGTAAGGTTAGATTTTGTAATAAGAGTTatttaaagacacacttaagGTTACACACAggtgagaaaccttatgaatgtgatacATGTAAAGCTAGATTTACTCAGAAGGGTCATTTACAGACCCACTTAAGAATTCACgctaataaaaaatcttttgatTGTGAGATATGTAACTATACATTTACCAATAAGAATTATTTAAAGAGACACTTAAGACTACACACCGGTGAATAA
- Protein Sequence
- MSLNTACRVCLAMDVPVHIIAGSPLQNIYEKLTGISLNTAHRPVVACYMCYYQLRKSHSLMVRSLKAEDVLTHFLHSGDAVQGKSMSMLNQKAYQLRNTLSVTPTKIIDVTSTDEDTEVQVKKEKSSDDNLIEIEIKKEPMTSECIDDEEILLRSADRMKLEPSDDKEDASRKVLENIKGNSRTAEGDLKQEELHLSNCATHVQDISTEEMIHNKNKMLSLPPPTVVSVDWQREVNVKSNAFEEPASSAPVDTRESTVLPLRRFSTKIWKPCSTVKKNEIPRRYCNIRTYKTKRTAPYSDTTVNKSDVTIFDGDACSSTNTDVGNTNSEHSRRMFVCDNCGDVFDDKHLLIEHIEQHVTGKEATSQQCGMLREQKYSTTGVVKGLADNGMNRFECEICKAKFSQNYKLQGHLRIHTGEIPYECEICKVKFTYKCNLKSHLRIHTGEKPYECEICKVRFSHNYKLEKHFIIHTGLKPYECEICKVRLTEKSTLKAHLRKHTGEKPYKCDICEIRFSLKKSLRYHLKTHTGEKPYECEICKFRFIQLGSLKSHLRIHTGEKPYECDTCKVRFGQKAHLNSHLRTHTGEKPYDCEICKVRFCNKSYLKTHLRLHTGEKPYECDTCKARFTQKGHLQTHLRIHANKKSFDCEICNYTFTNKNYLKRHLRLHTGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -