Basic Information

Insect: Hypsopygia costalis
Gene Symbol: -
Assembly: GCA_937001695.2
Location: CAKZJU020000315.1:424321-426803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 9.7e-05 0.0099 17.5 0.7 2 23 209 230 208 230 0.97

2 11 1.9e-05 0.002 19.7 2.8 1 23 240 262 240 262 0.98

3 11 0.0012 0.12 14.1 0.9 1 23 270 293 270 293 0.98

4 11 7.1e-05 0.0073 17.9 0.4 2 23 300 321 299 321 0.97

5 11 8.1e-06 0.00083 20.9 3.5 1 23 327 349 327 349 0.98

6 11 5.7e-08 5.9e-06 27.7 1.9 1 23 355 377 355 377 0.96

7 11 1e-06 0.0001 23.7 1.1 1 23 383 405 383 405 0.99

8 11 1.1e-06 0.00011 23.6 0.3 1 23 411 433 411 433 0.98

9 11 4.9e-05 0.005 18.4 0.5 1 23 439 461 439 461 0.98

10 11 7.9e-05 0.0081 17.8 1.5 1 21 467 487 467 489 0.96

11 11 0.00017 0.018 16.7 1.4 1 23 495 517 495 517 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	9.7e-05	0.0099	17.5	0.7	2	23	209	230	208	230	0.97
2	11	1.9e-05	0.002	19.7	2.8	1	23	240	262	240	262	0.98
3	11	0.0012	0.12	14.1	0.9	1	23	270	293	270	293	0.98
4	11	7.1e-05	0.0073	17.9	0.4	2	23	300	321	299	321	0.97
5	11	8.1e-06	0.00083	20.9	3.5	1	23	327	349	327	349	0.98
6	11	5.7e-08	5.9e-06	27.7	1.9	1	23	355	377	355	377	0.96
7	11	1e-06	0.0001	23.7	1.1	1	23	383	405	383	405	0.99
8	11	1.1e-06	0.00011	23.6	0.3	1	23	411	433	411	433	0.98
9	11	4.9e-05	0.005	18.4	0.5	1	23	439	461	439	461	0.98
10	11	7.9e-05	0.0081	17.8	1.5	1	21	467	487	467	489	0.96
11	11	0.00017	0.018	16.7	1.4	1	23	495	517	495	517	0.98

Sequence Information

Coding Sequence: ATGGaagacaaaattaaaattagtgTTATGAAAATATGTAGAGTATGTTTAACTGAATCTGATGATATGACACCTTTGTGCGACAAAATCAGCGGTGATCGAACTCTCAAGCAAGTGTTAACTTTTATTACCAATTATGATATAAGAACGGGTGTGAAATTCCCAAAACAAGTGTGTGGTGTTTGTAAAGTTAAGATAATTACTGCTGACGAGATAAAGCGGCGTTGCATTGAGTCGGAAACTATGTTAGGCCAATTTTTAGATGTGTGCGATCAGGTGCTAGAtgaaataaatggtttagaTCCTTTCAAGTACAAAGAAGAGCCTATCGATACTAATACAGTACCTCATACGTTCAAAACGGACACTACGTGCAACGAAGCAAGTAATATTACAGATACAAAACatgattttttcaaaaataatccGTCAATTATTGTAAAGGAAGAGGTGCCAGCTGACTTTGTGAATGAAGATGAAAATAATGACTACGGTGATAATAATATTGATGCATTTGAAAATGATGATACAGCAAGTATGGAGTCCGATTGTAAAGATATAAAGGttaaagaagaaaagaaaaacataaaaagtgtAAGCACTTCCAAACAATCTAAAGAGGTTACATGTCCGACATGTCAGGTGAAGTTTACATCAGCCAAAGCGTACAAAATACATCAAAGAAAACACAAAAAACATAACGAGAAAGTTGCAATGTACGAATGTTCAATGTGTTTGCGGAAATTCACGCGAAAATCATCTCTATCTACGCATATAAAGTATCATGAAAGTAAAGACAGCGTTAAATATACTTGTAAAACCTGTAAAAGAGAATTTAAGGCTCAAGCGTTTCTGGACAATCACATAAGTACTGTACATGCACGTAAAGAAGGTCTTACATGCAACCAATGTGACAAGAACTTTGATAGTCAAGACGTGCTCGATGCACATTTGAAAACACATACAATTGATAAGAAACATCAATGTAAATTCTGTAACAAATCTTTTATTATGTTGTCAACATTGACGGACCATATTCGGACTCATACGGGAGAGAAACCGTTCTTATGTTCGATCTGCGGGAAAAGCTTCAGTCAAAAGACTAATTTGAAGCAGCATGTGAGGAGACATCAAGGGTTGAAGCCATTTAAATGTGACGATTGTAAATACAGTTTTGTATCCAAGGGTGAATTAGAAGCTCACAAGCGCAAACACAGCGGAGCACATCCTTTCGTCTGCGACGAATGTGGCAACGGTTTCACAACATCAAGCTCGTTAGTGAAACATCGCAGAATTCATACTGGGGAACGGCCATATGCCTGCGATCTTTGTCCGATGAAGTTCACTGCATCAGGCACGTTGAAAAATCACAGAAGAACACATACAGGGGAGAAACCATATCAGTGTTCCCTTTGTGAGAAGGCTTTTGTGCAACGTAACGATCTGATTTCCCATATTCGTTGTCATACTGGAGAACGTCCGTATGTCTGCTCGCATTGTGGACAGGCCTTCAGGAAAGGTGCCGGATTAAAGACGCACTTCAAAATGCATAGCAAAGAGGCTTTGCTGCAAAGAGATCCAAGTTTGAGTATGTTACAAGGCGTGAATGCTTTGTTGAGCGGTATACATGATGGTAGTTAG
Protein Sequence: MEDKIKISVMKICRVCLTESDDMTPLCDKISGDRTLKQVLTFITNYDIRTGVKFPKQVCGVCKVKIITADEIKRRCIESETMLGQFLDVCDQVLDEINGLDPFKYKEEPIDTNTVPHTFKTDTTCNEASNITDTKHDFFKNNPSIIVKEEVPADFVNEDENNDYGDNNIDAFENDDTASMESDCKDIKVKEEKKNIKSVSTSKQSKEVTCPTCQVKFTSAKAYKIHQRKHKKHNEKVAMYECSMCLRKFTRKSSLSTHIKYHESKDSVKYTCKTCKREFKAQAFLDNHISTVHARKEGLTCNQCDKNFDSQDVLDAHLKTHTIDKKHQCKFCNKSFIMLSTLTDHIRTHTGEKPFLCSICGKSFSQKTNLKQHVRRHQGLKPFKCDDCKYSFVSKGELEAHKRKHSGAHPFVCDECGNGFTTSSSLVKHRRIHTGERPYACDLCPMKFTASGTLKNHRRTHTGEKPYQCSLCEKAFVQRNDLISHIRCHTGERPYVCSHCGQAFRKGAGLKTHFKMHSKEALLQRDPSLSMLQGVNALLSGIHDGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -