Hcos004002.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypsopygia costalis
Gene Symbol
-
Assembly
GCA_937001695.2
Location
CAKZJU020000067.1:693164-698470[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.4e-06 0.00045 21.7 0.5 1 23 389 411 389 411 0.97
2 16 0.002 0.21 13.3 2.2 2 23 418 439 417 439 0.97
3 16 0.059 6 8.7 5.5 1 23 445 467 445 467 0.98
4 16 0.0016 0.16 13.7 1.2 1 23 472 494 472 494 0.98
5 16 0.00019 0.02 16.5 0.1 1 23 500 522 500 522 0.96
6 16 0.0033 0.34 12.7 1.2 1 23 545 567 545 567 0.97
7 16 0.0016 0.16 13.7 2.5 1 23 573 595 573 595 0.97
8 16 0.001 0.11 14.3 7.1 1 23 601 623 601 623 0.98
9 16 1.9e-05 0.002 19.7 0.2 1 23 629 651 629 651 0.99
10 16 1.1e-05 0.0011 20.5 1.4 1 23 656 678 656 678 0.96
11 16 0.00023 0.024 16.3 0.4 1 23 684 706 684 706 0.98
12 16 0.00015 0.015 16.9 4.2 1 23 712 734 712 734 0.98
13 16 0.0039 0.4 12.4 1.2 1 20 740 759 740 763 0.90
14 16 8.4e-05 0.0086 17.7 0.5 2 23 769 790 768 790 0.97
15 16 3.8e-07 3.9e-05 25.1 1.0 1 23 796 818 796 818 0.98
16 16 1.1e-05 0.0012 20.4 0.6 1 23 824 846 824 846 0.99

Sequence Information

Coding Sequence
ATGACTCTGAACAGTGTGTGCAGGCTCTGCCTGTCGATAGACGTTCCTACGCACATTATAGCCGGCAGTCCGCTGCAAGGAGTCTATGAGAAATTCACCAATGTATCATTAACCACAGCTCACCGGCCGGTGGCAGCGTGTTACTTGTGTTACTCTCAGCTAAAGAAGAGCTACCAACTGATGGTCACGTCTGTGAAAGCCAACAACGTGCTGACACAAATGCTGGAGAACGGTGAACTGGTAAAcattttaattgaattaaatgTGTTGAAGGTGAATAGAGAATCAATCGCCATGAGAGAATACAAGACATGCCAGCTACTATATACTTTGGCTTTAACTCCCGTTGAAATCATCAGTGTTACGGGCACTGATCATGATTCGATGGAAGTTGACGTTAAAGAGGAACCATTGTCATCACAGGCAAACGAGACACTCGCACCAACAATGGTTGAACGTTTAAAATTTGAAGAATCAGAAGATGAAAATGATGTTGAAAATCCAGGATTGACAGTGGAAGGACCAACGGATGGTGACAACATGAAGAGTGCAGTTCTGGAAGACATACACTCTATTGAAAATCATGGTATGACAGATGAAGAATCAAATAGTGGTGACAACATAGATAATGAGGTTCTGGAAGACATGCATAGTATAGAAAATCTAAATGGGACAGATGAAAAAGTAATGTTTGAGGAATCAGAAAAAACAAAACTTATAAAGAACCAAGGATTTAAAGATGTCGATGCTGCAAAGGAATATCAAGAAACACGTGCAGAAATAACATATGACACGATAGCTCTGACGGCAGGCGAAGTGACTGTTCCACAGAAAACAAGAAAACGCAGAACAGACACAGAAGAAGACAAGCCAGGGAGATGTGTCGGTACTTACACGTTGAGAGGAACTAGACGAGCTGCAAATATTAGTCAAGTTTTAACAAACACATCTACGTGTTCAGATGCCGCGATAAACAATGGTGATAGTGGGAAGAGTGATATAAATAGTGGGGAAATCCCTGAACAATGTGATATAGAAAATGTTCGATTTATTCAGAATAATGATTCCAAGGTACGGGTAAGAAAACACAAGACGGAAAAGAAGAAAGACTTTGAACGTAAAAGTACTTTAAAGAGTAATTTAAAGGAACCCGCTTGGGAGAACTTTGTATGTGACGTATGTCAACGagtttttacgaaaaaaataaatttaaggcgTCATTTAGATATCCATTTTGTAAAAGAACTACTTACCTGCCAAGTCTGCGGGGTTAAAATTCGTCataaaaaaagtttgaaaacTCATTTATTAACGCACACTATAGAGAGACGGTTTAGATGCGAAAAATGTGAAGCCAGTTTTAAATGTAAAAGAACCTTTGAAAGACATTTAATGAAACACGCCGGTGAGCGTTTTTATTGCGAGTTCTGTCAGGGAGAATATAAGACGAAGGCTAGTTTGAATAAACATTTACTTAGTCATACTGGTGAAAAGTCGTACACTTGTGAGGTTTGCGGAGCCGGATTTTATCGTAAAAGTGATTTAAGCGGACATTTAAGTGGGCACAATAGGAAGAAACTCCGTGAAAACAAGAATTCACATCGTGCGAGGAGAAGCACTGGCGTCAAATATTTTGAATGCGATATATGCCACTACAGAACCGCTTTTAAACGTAGTTTGGTTGCACATATATCAAACCACAATGAAGTGAAACAGTTCGCCTGTAAAATATGCCACCGAACATTCGCTTGGCGGCGCACTTTCCAAGCACATGTGAGGACCCACACTGGGGAGGGCCTTTTTGAATGCTCCTTCTGCGAACGTAAATTTACCTATAAGCATTCTTTTACGTATCATTTAAGGACACACACTGGAGAGAGACCGTTCCAATGCGAAATTTGTAAAGTCAAACTGTCAAGCAAAAGCGCATTAACTGCACATTTAAGAATACATACTGGAAACGGTTTTCCATGCGAGGTATGTCAACAAAGATTTAGTACTAAACGTAATTTAAAGCGACATGTAACTCTCCACTCTGGTGATAAACCATATGCATGTGACGTATGTGGAGCTAGATTTTATGTAGACTACCATTTAAAAGGACATATGAGAATTCACACCGGGGAGAAGCCCTACGAATGTAAGATTTGTAAATGCAGATTTAAAGAGTCGAGCACATTAAAGGTTCATTTGACCACGCACAATACGGAGAAACCCTTTGAATGTGATTTATGTAGACGGGGATTTAAGAATAAGATAAGTTTGAGAAGTCACTTCGTACTAAAACATTCAGAGAAACGATTGCAGTGTGCGGTGTGCCCGCGGAAGTTTTCAACAAAATTGCAATTAGATAATCATGTAAGAACTCATACTGGTGAACAACCATTTGAATGCGAGGTATGCAAACGCACTTTCAATCAGAAAGCTAGTTTGAATAGACATTTAAGAATACACACTGGAGTGAAGCCCTACGAATGTGAAGTATGTCAACGACGATTTATTCAAAAAGGCAGCCTGATCTCACATTCGAGGACACACAATAAGACGAAATaa
Protein Sequence
MTLNSVCRLCLSIDVPTHIIAGSPLQGVYEKFTNVSLTTAHRPVAACYLCYSQLKKSYQLMVTSVKANNVLTQMLENGELVNILIELNVLKVNRESIAMREYKTCQLLYTLALTPVEIISVTGTDHDSMEVDVKEEPLSSQANETLAPTMVERLKFEESEDENDVENPGLTVEGPTDGDNMKSAVLEDIHSIENHGMTDEESNSGDNIDNEVLEDMHSIENLNGTDEKVMFEESEKTKLIKNQGFKDVDAAKEYQETRAEITYDTIALTAGEVTVPQKTRKRRTDTEEDKPGRCVGTYTLRGTRRAANISQVLTNTSTCSDAAINNGDSGKSDINSGEIPEQCDIENVRFIQNNDSKVRVRKHKTEKKKDFERKSTLKSNLKEPAWENFVCDVCQRVFTKKINLRRHLDIHFVKELLTCQVCGVKIRHKKSLKTHLLTHTIERRFRCEKCEASFKCKRTFERHLMKHAGERFYCEFCQGEYKTKASLNKHLLSHTGEKSYTCEVCGAGFYRKSDLSGHLSGHNRKKLRENKNSHRARRSTGVKYFECDICHYRTAFKRSLVAHISNHNEVKQFACKICHRTFAWRRTFQAHVRTHTGEGLFECSFCERKFTYKHSFTYHLRTHTGERPFQCEICKVKLSSKSALTAHLRIHTGNGFPCEVCQQRFSTKRNLKRHVTLHSGDKPYACDVCGARFYVDYHLKGHMRIHTGEKPYECKICKCRFKESSTLKVHLTTHNTEKPFECDLCRRGFKNKISLRSHFVLKHSEKRLQCAVCPRKFSTKLQLDNHVRTHTGEQPFECEVCKRTFNQKASLNRHLRIHTGVKPYECEVCQRRFIQKGSLISHSRTHNKTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00833308;
90% Identity
-
80% Identity
-