Hcos002446.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypsopygia costalis
Gene Symbol
clz9
Assembly
GCA_937001695.2
Location
CAKZJU020000041.1:932841-935600[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-07 0.00017 22.4 0.0 1 37 8 44 8 50 0.86

Sequence Information

Coding Sequence
ATGGCgccaaaaaaaaactataccccAGCACAGATGGGGAACGCCATAGAAGCTGTGTATAAGGGCGAAAAGGTATCTGTTGCTGCCCAAAAGTTTGGTGTGCCGAGAATAACCCTAAGGAATAAAGTCAAGGGTATAAGTCCAACCGTATGTTCAATGGGTCCCGCAACCTATTTGAGTAAAGCTGAAGAGGAAGTTTTGGTACATTGGGTGTTGTTGATGAACGAGAAGCACATACCTATAACTAAAGAAGAGTTATTAGATAGCGTGCAGAAAATAATCGTGGACAAAAAACAAGAAACGCCCTTCAAGGACAACAGACCAGGAAAGAAATGGTACGAACTTTTCTTAAAACGCCACCCTATCATTGCAGAACGTACAGCTGAAAATTTGTGCAGAGCTCGTGATAATGTAACGCAAGACGACATTGAAAAATGGTTTAAAAACGTAGAAGACTATTTAAAAGACAATGAACTAATGTCAGTGCTAGAGGAACCGGAAAGGGTGTTCAACACTGACGAAAGTGCCTTTTTTTTATCTCCAAAACCGGGAAAAGTGCTAGCCAAAAAAGGAGAAAAGCACGTCTATTCGTCCTCAGGGGATGATAAAGAAAACTTGACGGTCCTAGTAACTGGAAATGCTGCTGGCCAACTAGCACCAACTATGGTTATCTACCCCTATGAACGTGTCCCTGCAGCTATAAATTCCAGTTTTCCATCTGAGTGGGCTTTGGGTAGATCTCCAAGTGGTTGGATGTATGGAGCCACATTCTATGAATATATGGCTAATATATTTCATCCTTGGCTGTTACGACAAAACATTAAAAGACCGATTTTGTTCTTCTTAGATGGACATAAATCCCACATGACCATGCATTTGTCTGATTTCTGTGTAGATAATCAAATAACGATTATAGCTCTCAATCCAAATAGTACGCACATCTTACAGCCGATGGACATAGCAGTGTTCAGGCCGTTAAAAGTGTTGTGGCGCAAGGCTGTTGCAAAATGGAAACTTAATACCGGACATAACCTAAAAAGAGAGAACTTTGCACCTGTACTAAAGCCTGCTCTTGATGCAATTAGTCCAGACACTCTAAAAAACGGATTTCGTTGTGGTGGAATATGCCCCTTTGGTTCAAGTTACATCGACCTTTCAAAATTTAAAGCAAAGCAAGCTATGCCGAAACAAACATATGATTTCTGTTTTCTCCGACACCTcgaaaacgaaataaaaacCAAATTTAACTCTGAAAAATTACAGTTATTTCAAGAGCTATACTACTTAAGCAGAAGCCAAGTTGATGATCGTTTACCGATCGAAGATTCCGCCCTTTACATAATATGGGCAAGTGCTAAGCACTCTTCAACATCTTCAAATGCCATACAAAACACTGCTACATCTTCTGACACCGCTGATGCCACACAGAGTGGCAGCACTTCTACTGCTTCTGCTGAAAATTTACAAGAAATCCTACCCAACGTCCCTTTTCTTGGAGACAGGCCTACGATTTCTAAAGAGTTAATTCCAACACAGAATAGCAGCATCTCTACTGCTATTAAAAATTCGCATACAATTGTTAAAGGTACCCTTACAAAAGAATGCTTAGGaatagaagaaataaaaaatcccCGATCTCCACAAATTCCCGAATCACATGTAGATGATGTACAAGATATTTTGACACCAGACGTTTTAACAACTACAAATATAAACAAGTCAACCGTAGTAATCATTTCCGATCAATTAATCAGTGCCCCAACATCAACGCAGAGGTTTGAGCTGTCTGACATCAATTATTCCGAAAAACATGAGTCtgaaaatgcaaataaaaaatcatcTGGTTGCTTTAGCAAAGTTCCCGACTTATCTTCGACTCAAATCCGTAGCTTGTCTCACGCGAGTGTTAATACACTTGAAGTCACTCAACCAGAAACACCTCTCATAAACTTACATcaaaaacttattaataatgaaaagacacccataaaaaaatcttatacttGCACTACGGGATTAGCTGGACCATCACAaagccaaaaaaatattaatgcttCACATCAAATAATACCGTCTCCGTTTAAAAGGAATTTATTCTGGCCAGAAGAGGAAGTATGCAAACAAGGGAAGAAACGGAAAAGAGAGAAGATACCATTTGTAGTAACTAGTGACGCATGGAGAGAATaccataaaaaaaaggaaaacgaGAAAAACTTTAAATTGGAAGAGAAACAAAGGAAATCCAAGGAAAGGGAAGAAAAGAAGTTATTGAAAGAAAATAGTGCccgaaacaaaaataaagagaaaaagcCAAAAGTAGTAAAGAAACCAGTAAAACAAAGTGACTCTTCAGATGACACGGATACAGAGATTAATTACGCTGAATCTGATGCTAGTATTGACGAAAGTGGTTTATGTAGTCAGGATAATTTACATGATTCTAGTAGTTCTGAAACAGAAAATGTAGTGCCTCTGAGCAAAATGCGTTTTCAGAAAAAGCTGTTAAAGGGTGCTTACGTTATTGTAAAATATGAAGCAGAGTATTTCCCTGGAATCATCAAATCTGTCCATAATAGTGCGTTTGAAATAAGCACTATGACATTTTCCACAGGCAACACCTTCAGGTGGCCCGAAAAACCTGACATAATTTGGTACGAACAAACGGACATCATTGAAGTTATTGATGCTCCTATCCTGTGCAATAAAAGAGGATTTTTTGTAGTCAAAGAAATGTCGAAATATCTTtccttcattgtttga
Protein Sequence
MAPKKNYTPAQMGNAIEAVYKGEKVSVAAQKFGVPRITLRNKVKGISPTVCSMGPATYLSKAEEEVLVHWVLLMNEKHIPITKEELLDSVQKIIVDKKQETPFKDNRPGKKWYELFLKRHPIIAERTAENLCRARDNVTQDDIEKWFKNVEDYLKDNELMSVLEEPERVFNTDESAFFLSPKPGKVLAKKGEKHVYSSSGDDKENLTVLVTGNAAGQLAPTMVIYPYERVPAAINSSFPSEWALGRSPSGWMYGATFYEYMANIFHPWLLRQNIKRPILFFLDGHKSHMTMHLSDFCVDNQITIIALNPNSTHILQPMDIAVFRPLKVLWRKAVAKWKLNTGHNLKRENFAPVLKPALDAISPDTLKNGFRCGGICPFGSSYIDLSKFKAKQAMPKQTYDFCFLRHLENEIKTKFNSEKLQLFQELYYLSRSQVDDRLPIEDSALYIIWASAKHSSTSSNAIQNTATSSDTADATQSGSTSTASAENLQEILPNVPFLGDRPTISKELIPTQNSSISTAIKNSHTIVKGTLTKECLGIEEIKNPRSPQIPESHVDDVQDILTPDVLTTTNINKSTVVIISDQLISAPTSTQRFELSDINYSEKHESENANKKSSGCFSKVPDLSSTQIRSLSHASVNTLEVTQPETPLINLHQKLINNEKTPIKKSYTCTTGLAGPSQSQKNINASHQIIPSPFKRNLFWPEEEVCKQGKKRKREKIPFVVTSDAWREYHKKKENEKNFKLEEKQRKSKEREEKKLLKENSARNKNKEKKPKVVKKPVKQSDSSDDTDTEINYAESDASIDESGLCSQDNLHDSSSSETENVVPLSKMRFQKKLLKGAYVIVKYEAEYFPGIIKSVHNSAFEISTMTFSTGNTFRWPEKPDIIWYEQTDIIEVIDAPILCNKRGFFVVKEMSKYLSFIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00832873; iTF_00284479; iTF_00284476; iTF_00284477;
90% Identity
iTF_00832873;
80% Identity
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