Hcos021364.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000406.1:354475-355581[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 1.3e-06 29.2 0.1 2 38 16 52 15 56 0.92
Sequence Information
- Coding Sequence
- atggTGCGCACGTACAAACCCAAAACTgatagaaaaaatatcaatgaaGAAAACATTGAAGACGCAATACGTGAAGTATTGTCAAAGACTTTATCTATACGCAAAGCAGCCGACAAATATAGCATCAAAACTGCGACCCTACAACATCGCATAGAAAAAGCCAGAAAATCATTTGAAGCTACCAGAATATTATCTACAAATGAAGCATCCTCTTCATTACAAGCAGAATCTTCTTTATCACAAGCAGGTCCATCTTCACCACAAATAGCACCATCTATGGAGATGGCACAAATAGCGTCATCTTCAGCACACACTACTACTGCAGCTTTATCATCACACACTGCTACAGCTACTTCATCAAACATCTATGGTTCCAAGTATACCGTTGCACAAGTTTTTTCAATCGAACAAGAAAAGGCATTGACTCAATATTTATTGAATTGTAGTAAAATGCACTACGGCCTTACATTGAGACAGCTTTTGACTTTGGCATACGAGTTCGCAGAATCCTCAGGGTGTAATTATCCAAAACCCTGGAAAAAAAACAAATGCGCTGGAAAAGATTGGGCAGCTGGCTTCAGGAAGAGAAACCCAGAATTGAGTCTACGAAAACCAGAAAACACAAGCGCAGCAAGAAGCTTTGCTTTTAATAAAGCTGCTGTAGCTCAATTTCATGATAATTACGAACGCATAATGAGACAGTACAATTTTACACCCGATCGAATAATAAACTTAGACGAAACAGGCATAAGCACAGTTCTTTCTACTCCTAAAGTTATTGCTGGAAGAAAACAAAGACAGGTGGGACAAATAGTTTCTGCAGAACGCGGAGAGTTAGTTACTTTCTGTGGTATTATTACTGCTACTGGTTCTTCTCTTCCTCCAGTTTATGTCTTTCCAAGAGTTCACTACAAAGATCACTTCCTAAATGGAGCTCCTGATGGAAGTCTAGGGTTGGCAAACAGAAGCGGCTGGATGACATCAGAATTGTTTATAAGAGTTTTGAAACACATTCAACGCCTTACTTCGAGCAATAAAGATAACCCAATTGTAATCATTTGTGACAACCACGAATCGCACATTTCAATAGAAGCTGTTAACTACTGA
- Protein Sequence
- MVRTYKPKTDRKNINEENIEDAIREVLSKTLSIRKAADKYSIKTATLQHRIEKARKSFEATRILSTNEASSSLQAESSLSQAGPSSPQIAPSMEMAQIASSSAHTTTAALSSHTATATSSNIYGSKYTVAQVFSIEQEKALTQYLLNCSKMHYGLTLRQLLTLAYEFAESSGCNYPKPWKKNKCAGKDWAAGFRKRNPELSLRKPENTSAARSFAFNKAAVAQFHDNYERIMRQYNFTPDRIINLDETGISTVLSTPKVIAGRKQRQVGQIVSAERGELVTFCGIITATGSSLPPVYVFPRVHYKDHFLNGAPDGSLGLANRSGWMTSELFIRVLKHIQRLTSSNKDNPIVIICDNHESHISIEAVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192614; iTF_01192611; iTF_01527054; iTF_00178028; iTF_00178027; iTF_00666446; iTF_00809040; iTF_00421281; iTF_00237455; iTF_01246770; iTF_00394345; iTF_00761580;
- 90% Identity
- iTF_01192614; iTF_01192611; iTF_00178028; iTF_00178027; iTF_00666446; iTF_01527054; iTF_00809040; iTF_00403701; iTF_00771836;
- 80% Identity
- -