Hcos034231.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000833.1:604588-606563[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.18 1.6e+02 3.3 0.0 28 38 15 25 14 29 0.82 2 2 1.7e-10 1.5e-07 32.2 0.0 4 43 61 100 58 102 0.93
Sequence Information
- Coding Sequence
- ATGGTTGCTAAAACATTAAGGCTAAGTTCAGATGGCCGCGCGGTACCCCACGGAACGCTTGCCGCGCGGTACAAGATCAAAGTAAACGATGGTTATCGTTTACATGACCGCGCAGCACCGCACGaaGTGTCTTCAATTGCTACCAGTCAATATAAAAAGCGTAAGAAGTGGAGTCAAAATGATATGGCTACTGCAGTACTGGCTGTTCGAGATAAGAAAATGGGCTATTTAAAGGCAGCGAAAACTTATAATGTACCCAGAACCACCATATTTCGAATTGCTAAAGAAAAAGAGAGTTTGTTGGAAGACACGCTAAGCACAAAGATAGATCGTAAACCAATAAATAAAGTTTGA
- Protein Sequence
- MVAKTLRLSSDGRAVPHGTLAARYKIKVNDGYRLHDRAAPHEVSSIATSQYKKRKKWSQNDMATAVLAVRDKKMGYLKAAKTYNVPRTTIFRIAKEKESLLEDTLSTKIDRKPINKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -