Hcos008493.1
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000147.1:199033-200861[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-12 1.9e-09 38.3 0.3 1 39 13 51 13 56 0.92 2 2 8.6 7.6e+03 -2.0 0.0 16 23 129 136 126 136 0.82
Sequence Information
- Coding Sequence
- ATGAACCCACCTGAACGAAACAAGCGTGGTAAGTGGTCAGAAACACAACTAAAGGCGGCCATGCAAGCGGTTAATAGACATGAAATGTCACAGCGAAAAGCTGCTGCGGTGTATAGCATTCCAAGGCGTACACTGAGAAACCATCTAAAATCCGGAAGTAAACAAAAGGTAACTGGACGAGTCCCAGTTCTCCGTAAAGAGCAAGAACGCGATTTAGCTCAAAGAATTATTAGACTTTCTCATGTAGGCCTACCATTGACTCCAAAACTTGTCCGAAAGCAAGCCTACGAATTTTGTAgggcaaataatataaaaaatcccTTTAGTGATAATAGAAACATTGCGGGCAAGAAATTGTTGAAAGGTTTTATCAAACGCAACCCTGAAGTATCTATCCGTAAGGCGCAATTTATGAATCCCGGAAGAGCTCAGAAACTTAATAAGCCCATCGTTCAGCAACACTTCCAAgccgtgaaaaaaaaatatgagaagtTAGATATTTGTAATCATCCTGAACGTTTATACAACGTGGACGAGAAGGGGTATGGTTACAATGAAGAAGATTTTACCATGACATTTCGAAGGCAATACCGATTTCCCCATAGATCTCTAAATATCTATCCTTCGACTTCTTCAGAAGacgaaaatttaattaatgaccCCGACGACCCCGAAGATAACATACCACTATCAATTATTAAAGAAATTCTTGGATCCTCGGCTAGCAAGAAATCATTTCATAAACAAATCCCTACACCTAATTTTGCCAATGTTAAGGCTAAACCAAGACGCAAAACTCTGAATTGCGTAGGTTGCAAAATAGAACGTATAGCAGATATGCGTGAGTGTAAAGAGTGTAGGCTGTGGTATCACGAGGAATGTGTGGGATTAACACAGGCAGACATAGAAGAGTTTGTGTGTCCAGATTGCAATTAA
- Protein Sequence
- MNPPERNKRGKWSETQLKAAMQAVNRHEMSQRKAAAVYSIPRRTLRNHLKSGSKQKVTGRVPVLRKEQERDLAQRIIRLSHVGLPLTPKLVRKQAYEFCRANNIKNPFSDNRNIAGKKLLKGFIKRNPEVSIRKAQFMNPGRAQKLNKPIVQQHFQAVKKKYEKLDICNHPERLYNVDEKGYGYNEEDFTMTFRRQYRFPHRSLNIYPSTSSEDENLINDPDDPEDNIPLSIIKEILGSSASKKSFHKQIPTPNFANVKAKPRRKTLNCVGCKIERIADMRECKECRLWYHEECVGLTQADIEEFVCPDCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -