Hgut013682.1
Basic Information
- Insect
- Hypselothyrea guttata
- Gene Symbol
- -
- Assembly
- GCA_035045125.1
- Location
- JAWNNJ010002141.1:1732759-1737658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.045 3.2 8.4 1.2 3 23 336 357 336 357 0.97 2 17 0.058 4.1 8.1 1.8 2 23 400 421 400 421 0.93 3 17 5.6 4e+02 1.8 3.0 2 17 432 447 431 458 0.75 4 17 0.28 20 5.9 1.1 3 19 491 507 489 511 0.87 5 17 0.00038 0.027 15.0 1.7 1 23 519 542 519 542 0.98 6 17 0.0021 0.15 12.6 0.3 2 23 547 568 546 568 0.97 7 17 1.1 80 4.0 0.3 1 19 576 594 576 596 0.92 8 17 7.3e-05 0.0052 17.2 0.5 1 22 616 637 616 640 0.91 9 17 1.1 75 4.1 0.7 1 21 645 665 645 666 0.88 10 17 0.94 67 4.3 3.8 1 23 685 710 685 710 0.96 11 17 0.053 3.8 8.2 2.0 2 23 726 748 725 748 0.93 12 17 0.012 0.89 10.2 0.4 3 23 755 776 753 776 0.93 13 17 0.0039 0.27 11.8 0.6 2 23 780 802 779 802 0.96 14 17 8.4e-06 0.0006 20.2 2.0 1 23 808 830 808 830 0.99 15 17 0.0042 0.3 11.7 1.0 1 23 834 857 834 857 0.93 16 17 0.00011 0.0077 16.7 0.9 1 23 863 886 863 886 0.97 17 17 0.012 0.85 10.2 0.4 3 23 896 918 890 918 0.90
Sequence Information
- Coding Sequence
- ATGTCGcagaatttgaaaatttgtttgcacTGCGGCGTGCGCAATTCAAAAACCGCTTACCAGCCGATATTCGACGAGCTGGGCATTGAAATCGAATTGGCCGAGCTCTTGGCCAAATACTTCGAGCTAAGCGTGCAGTCCGATGCCGATGCCAAAAACCCGCAATTATTATGCCAGGAGTGCGTAAACACGTTAATACGCTTCTTTGACATCGACgagctgcagcggcagcagcaggcggccaATGAGGCCAAAAGCAAAGATGCCAAATCGCTCGGAACACCGCCACAatcctcctcctccccctccccctcgccCCTCCCGACACCATCAGCGGCTGACAGAAAAAGCGACGCCAAACCCGCCAAAAAACAAGCTTGCTATGCAACCCGATCCTCCAGCGTTGCCAAAGCTGCGCCAGCTGTTAAAACCGCCATAAAAGCCGCCAAAAGGCCGCCAGTTAAGGCCAAAACGCTGCCCAAGCAGCAGCTTAAAGCCAAAGCCGCCAACACTGCTGAGAAATCTGCCAATGCCAAAGATTCGGCCTCTGGGGAGCAGGAGCAGTTTAGCGCCATGATACGGGACATACTGGACGAGGAGGACACGCCCACAGCGCAGCACCAGTTTGCCAAGACTCAGGACACTGTGCAGCAGCAGTTTGCCAAGTCTCAGGAcactgtgcagcagctgcagaccAAGCAGCAGGCAACGGATTTCAACCCCGAGAAACAACAGCTCAGCAATGAAATGGAATTTCTGGTGGAGCACGAGGACGGCTGTTTTGACATCGATGTGGCACACTTTAAAGTGGAGCAGAACTGCACTCCCACGCACTCCGGCTCActggaggaggagctgcagaGCGAGGAGGAAGGTTCGGTAAAGGTGGAACCCTTCAACTTTGTGCTCATCAAAGAGACTGACGACATCGGAGATCTGCATGAATATCTGACCACGGTGGTCAAGACCTGCTTCGAGACCCTGAGCTTTGAATGGAGCATCGGCTGCGGTCTCTGCCCGCTGCAGTGCAGCAGCTTTGAGCAGCTCTTGGCGCACATGCAGCGGCGTCATCAGCTTCCCAAGGAGCGCTTCAATTGCCCCATAGAACCCTGCAAAGCGGAGCTGCAGGGCGTCAAATCTTTGGCCATGCACTTGGTGCTGTTGCATGGACCGGTGGCAAACATTCCGATCTATGGCAGCTGTCCGGAGTGCAACATGAACTTCTCCAACATACTGCAGTACAACAAACATTCCTGCGCCCATGTCATCAAAAAGCGACGCGGCATTCGCCTGTACTGCGAGATGTGCGGACTGGAGTTTCCCTCCTGGAAGCGTTTCAACTTTCATAATCAATTCCATCTGGAGCGTCACAGGCCACGCGCCTGCTTTGTCTGCAActatgccaacaacaacatcgatgCGCTCTTTCAGCATCTGCACTATGCGCATGAGATCGAGGGCACGCTCTTCTGCGACATCTGCGATCGGCAGTTTCGTGACGCGGCTGTCTTCGCGGAGCACAACAAATGCCACACGAACGTGAGCAACAACACCTACACCTGCAGCGAGTGCCATGCGAACTTCGAGACACGCGGACGCCTCAATGGGCACATGCGCTCCACACACGGCACCGTCATCAGCTGCGAGCTGTGCAGTCGGGAGTTCGGCTCGGAGGCCACCTACAACGTGCACATGAAGAAGCATCTGATTATCGAGCGGGAGGTGCACGTCTGCAGCAACTGCGGCCAGCTCAGCGAGCACAACGACAAGCTGCTGGATCATGTGGGCAATGAGCAGTCGGATTGCTTTGGCGCGGACATTTACTCGGAGATGCTGCGCGATGCCTACATTTGTGAATATTGCTCGGCGTACTTCAAGCAGAAGAGCGATCTGCGCGCTCATCGCCAGTCCGGCGTACATGGGGACGGAGTGTTCAACTGTCTGCCCTGTGGCAAGCAGTTTGGCGAAATGAAACTCTATCGCCATCACATACGCAACTATCAGCAGCAACGCGGCGATATGCAGCATCGCAAGCTGGAGATTTGCCTCTACTACATGTGTGATCATGAGGACTGCTGCGAGTCGTACATCAATTGGAACTCGCTCTACACGCACAAGCGTCGCACGCACGAGCTGCCCCAGAAGCTGGACGCAGCTGTCAAGGCCAACGAGTGGATCTGCCAGTTCTGCCAGAAGCAATGCCGCTCCAAAATGTCGCTCTCAGTGCACGTGGCACGCAGCCACAACAATAACAATGTAATCTGCAGCGTTTGCAATTCCTCGTACAAGAACGAGGAGGCGTTGCAGACGCACCATCTCTATTGGCATGAGCCCATGGAGTGCAATCTGTGCCTCAAGACGCTCAAGAATCAGCGCAACTACGACACGCACATGAACGTGGTGCACTCGAACAGCCAGCGCTACAAGTGCAGCGTCTGCGAGAAGGGCTTCTATCACAAGAGCGAAATGGAGGCGCATCAGCGGCTGCATTCTCAGCTGTTCAGCTGCGATCAGTGCAACTTCAGCACCAGGAACAAAAAGTCGCTGTCGGTGCATGTTTTGGGGCAGCATTACAAACGCTTCGCCTTCGAGTGCAAGCAGTGCGAGAAGCGCTTCGGGCGTCGTCAGGGTTTGACCAGCCACGTGCAGCGTGCGCACGGCTCCAAGTACGTTTGTCGCAACTTCTGCGATGTGGGCTGTGCCAAAGTCTTTGCCACCATTACCAGCCTCAATGTGCATGCGCGCAAGGTGCACGACGTGAATGTTATGGTCTTCGATAAGCTCGACAGAGCGGCGGCCGAGGAAGACGAAGCGGAAGTGCAGttggatgaggaggaggaggaggaaagCGAGGCAACACCGAGCACATCGCGAAAGCGTGGCATACGCCTCAGTGAGGATACGCAGATAGAGTTTATAGACAATGACGAGAGCCAGAGCACAACGGAGAGTTTTGAGCACACATCGCCGTCCAAGCCAAAGAAACAGAAGTCGAAATAA
- Protein Sequence
- MSQNLKICLHCGVRNSKTAYQPIFDELGIEIELAELLAKYFELSVQSDADAKNPQLLCQECVNTLIRFFDIDELQRQQQAANEAKSKDAKSLGTPPQSSSSPSPSPLPTPSAADRKSDAKPAKKQACYATRSSSVAKAAPAVKTAIKAAKRPPVKAKTLPKQQLKAKAANTAEKSANAKDSASGEQEQFSAMIRDILDEEDTPTAQHQFAKTQDTVQQQFAKSQDTVQQLQTKQQATDFNPEKQQLSNEMEFLVEHEDGCFDIDVAHFKVEQNCTPTHSGSLEEELQSEEEGSVKVEPFNFVLIKETDDIGDLHEYLTTVVKTCFETLSFEWSIGCGLCPLQCSSFEQLLAHMQRRHQLPKERFNCPIEPCKAELQGVKSLAMHLVLLHGPVANIPIYGSCPECNMNFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCNYANNNIDALFQHLHYAHEIEGTLFCDICDRQFRDAAVFAEHNKCHTNVSNNTYTCSECHANFETRGRLNGHMRSTHGTVISCELCSREFGSEATYNVHMKKHLIIEREVHVCSNCGQLSEHNDKLLDHVGNEQSDCFGADIYSEMLRDAYICEYCSAYFKQKSDLRAHRQSGVHGDGVFNCLPCGKQFGEMKLYRHHIRNYQQQRGDMQHRKLEICLYYMCDHEDCCESYINWNSLYTHKRRTHELPQKLDAAVKANEWICQFCQKQCRSKMSLSVHVARSHNNNNVICSVCNSSYKNEEALQTHHLYWHEPMECNLCLKTLKNQRNYDTHMNVVHSNSQRYKCSVCEKGFYHKSEMEAHQRLHSQLFSCDQCNFSTRNKKSLSVHVLGQHYKRFAFECKQCEKRFGRRQGLTSHVQRAHGSKYVCRNFCDVGCAKVFATITSLNVHARKVHDVNVMVFDKLDRAAAEEDEAEVQLDEEEEEESEATPSTSRKRGIRLSEDTQIEFIDNDESQSTTESFEHTSPSKPKKQKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -