Hrec029703.1
Basic Information
- Insect
- Hyppa rectilinea
- Gene Symbol
- -
- Assembly
- GCA_951799385.1
- Location
- OX637327.1:6257483-6263961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.5 7e+02 2.0 1.0 12 23 5 16 2 16 0.84 2 12 4.7e-05 0.0044 18.4 6.9 1 23 22 44 22 44 0.99 3 12 2.2 2e+02 3.7 0.1 1 14 50 63 50 66 0.89 4 12 0.79 74 5.1 0.3 1 23 151 174 151 174 0.89 5 12 0.0015 0.14 13.7 0.1 2 23 200 222 199 222 0.97 6 12 0.032 2.9 9.5 1.6 1 23 332 355 332 355 0.93 7 12 0.59 55 5.5 0.2 2 23 382 404 381 404 0.94 8 12 1 97 4.7 1.6 2 23 427 448 426 448 0.95 9 12 0.00042 0.039 15.4 0.4 1 23 452 474 452 474 0.96 10 12 0.00032 0.03 15.7 0.8 1 23 479 502 479 502 0.98 11 12 0.0087 0.8 11.2 0.6 2 21 510 529 510 532 0.87 12 12 0.00021 0.02 16.3 1.8 1 21 538 558 538 559 0.95
Sequence Information
- Coding Sequence
- ATGCAGTTTTTCCTGAAACATCTCCTAGTAGAACATATGAGGGTACATACAGGGATTAAGAAGTTCCAATGTCATGTGTGCACGAAACACTATGCGACTAAAAAGTCGTTGCGACAGCATCTTCGATCGCACGCTGACGATCGACGGTTTGCGTGTACTGTGTGTAGTCTAGCATTTGTGCAGAAACGTCTCCGTTCCAGAACTATTCGCGAATCCCCAATAATCTTCGAAGATGAAGAGAAAAGCATCACTTTGGACAGGAAACTCAACTTTTCTTCTTTCGTCTCCATACGTCCGGTAGGCAATAAGACCATACCTTGGGTCCGGGAGCAGCAACAGAAAATTGCCCAAGAGAGACGTTTGACGGAACTGGACTGGCAATTCGACAATATTAAGACGGTTCTCAAATGCTCCAACGCTTCGCCCGTCCGTTGCCGTGTAGGCACAAGATTTGCTTGCAGTTACTGTCTCGACCAATTCCAAAACCCAACGGAATTGAGAAGCCATTCGATACAAGCCCACGTGAATGATAGACCCGAGTTCTTTAACGCTAGATCTTTGTCCAGACATATCGTATATTTGGACATAACCGATTTGAAATGTAAGATTTGTGACCAGTCTATCAATGGATTGGATCAGTTGATGGACCATTTGAAGACTGTTCATGAGGAATTGATTTATAAGCAGATAAAGAATCAGATTGTGCCGTTTAAGTATGATGGTCGGAACCTCCTGTGCGGGGTTTGCGCAGTGGACATAGGAGACTACACTGATTTCCAAGATCACATGTCTGAACATTACAGGAACTATATTTGTGGTACCGATCCAGAATCCATACTGATCGAGATAGAAGTCGACATGTCTGCATTTTTCACCTCTGAAGACAAAACTGAAGTCCCCATGCTCACCGAAGTCGATAAACACAGACAGAATATCCGAACTATCCTCCTTTGCACCAACGCTACGCCGATTGGAAGATACGGGAGCCTCGGGTACAACTGCTGCTTCTGCACCGAAGTCTACTCAGCCCCCAGGGAGCTCAAAAAGCATACAATCGAACAACATGACGAAGAAAACATCTCGTCCTATATGAAGAACTACACAATGCTTAACTATATCGTCAAACTAGATATTACGGACCTCCGCTGCGAAATGTGCATGGCACCGTTTAACGAGCTCAATGAACTGATGCATCACCTCATGTTAGAACACCAGAAATTCTTCCACACTGACATTGGGAGTCACATCGTTCCTTTCCGCTTCAATTCGGAAGTGCTACACTGCGTCGAATGCTCCTTCGAGTACAAAAACTTCAAGATCTTACTCGAACATATGAACACACATTATAGTAACCACATCTGCGAGGTTTGTGAAGCTGGCTTCGTGAACCGTAGGATGCTGCAAGCCCACATGTATCGACACAAAACTGGAGTCTTCCAATGTGGTTTTTGCTCTAAAGTTTTTGATACTCGAGTCAAGATGAAAGTGCATGAGCGGATGGTACATTTGTATGTTAAAAAGAGACCGAAGTGCACTATTTGTGACAAGAAGTTCAATGACTTCCAAAAGATGATACAGCATGAGGCTGATGACCACGGTCTTCAGAGGGAGTTTAAGTGTGAGATTTGTAGCAGAATGTTTTCTACCCAAAGATCTTTTACGATTCATAAAAAGTTCTACTGCGTTCCTAATGATTAG
- Protein Sequence
- MQFFLKHLLVEHMRVHTGIKKFQCHVCTKHYATKKSLRQHLRSHADDRRFACTVCSLAFVQKRLRSRTIRESPIIFEDEEKSITLDRKLNFSSFVSIRPVGNKTIPWVREQQQKIAQERRLTELDWQFDNIKTVLKCSNASPVRCRVGTRFACSYCLDQFQNPTELRSHSIQAHVNDRPEFFNARSLSRHIVYLDITDLKCKICDQSINGLDQLMDHLKTVHEELIYKQIKNQIVPFKYDGRNLLCGVCAVDIGDYTDFQDHMSEHYRNYICGTDPESILIEIEVDMSAFFTSEDKTEVPMLTEVDKHRQNIRTILLCTNATPIGRYGSLGYNCCFCTEVYSAPRELKKHTIEQHDEENISSYMKNYTMLNYIVKLDITDLRCEMCMAPFNELNELMHHLMLEHQKFFHTDIGSHIVPFRFNSEVLHCVECSFEYKNFKILLEHMNTHYSNHICEVCEAGFVNRRMLQAHMYRHKTGVFQCGFCSKVFDTRVKMKVHERMVHLYVKKRPKCTICDKKFNDFQKMIQHEADDHGLQREFKCEICSRMFSTQRSFTIHKKFYCVPND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121920;
- 90% Identity
- iTF_00375789; iTF_00121920;
- 80% Identity
- -