Hrec030076.1
Basic Information
- Insect
- Hyppa rectilinea
- Gene Symbol
- sfc2
- Assembly
- GCA_951799385.1
- Location
- OX637327.1:10219335-10220579[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.7e-07 6.2e-05 24.2 1.1 2 21 109 128 108 129 0.94 2 10 6.9 6.4e+02 2.1 2.1 3 23 135 155 134 156 0.88 3 10 0.0095 0.88 11.1 0.1 1 23 160 183 160 183 0.92 4 10 0.00055 0.051 15.0 3.8 1 23 188 210 188 210 0.96 5 10 0.68 63 5.3 6.1 1 22 213 234 213 234 0.95 6 10 6.1e-05 0.0056 18.0 0.3 1 23 248 271 248 271 0.95 7 10 2.3e-05 0.0021 19.4 1.7 1 23 277 299 277 299 0.98 8 10 6.5 6.1e+02 2.2 0.1 6 23 310 327 310 327 0.89 9 10 0.71 66 5.2 2.8 1 23 333 356 333 356 0.91 10 10 0.0041 0.38 12.3 1.7 1 23 364 387 364 387 0.94
Sequence Information
- Coding Sequence
- ATGGAGCTGGACCCCGCGCTCCCCTGCATCCTATGCCGGAGGTGTTCCGACGACACCGTCGCAGCCATTACCTTCAAGAACCTCTGTGCACTGTCGGCATACCATTGGGCAGATGGATCCAACTACCTCTCCCATACCCCATCTCCCACTGAAGATGATAAAGCGTTCTTCATCCTCTATAACAACGAAAAGACCATAGTAAAAGACCAAATCGCCAGGGTTCCCACCACGAAGGATGCTGTCGACAGGTTAAATATGAAGTGGGCAAAACCAGTGAAAACTCGGAGACGCAGATATCGGCAGGGCATTATAAAAGAATTTTGTAGATGTCCTGATTGTGGCAGAAAATTCTCGACGCCTGATTATTTGAACAACCATCTTAGAAATACGCTCACAAGAGCTTGTCGCAGATGTAGATTGGTTGTGAACAAGAAGAAGCTGGCTAAGCATTTGTTGAAGGTTCACCACGTACACGTGTTTGAATGTAATGTCTGTAATAAATTGTTTGATGAGGCAGAGCTTATGAAGCAGCATGTTGAAGAGGCTCACGGCAAACATATGCATTCATGCAGTCACTGTGGTAATAGTTTTGTGAATGAAAGAGCACTGAGAGCTCACGTGCATTCCCACTCGCTGTTTCATTGCAGTTCCTGCAACATGAGCTTCAACAACGTTAAATGTTTCAAATACCACCAGCAAACATGCGAGGTCTTGCACCGACCATCAGTCGAGTTCAAACACTTCACTTGCGACTACTGTGGCGTTATTTACAACCGGAAACCCTCACTTAGAATACACATCATCCAAAAGCATCTTAACATTCTGCCATACGTTTGCCAAACCTGCGGAAAACGTACATCCACGTTAGCGCATTTGAGGTCTCAtgaaaaagtacataaaacggagcGTAAAGTCTTTCAATGCTGCTGCGGGGCTCAACTAACTACCGAACTAGGTTTTCAATTACACCAGAGAATTCACACTGGAGAAAGACCCTATAAATGTGAACATTGTGGGGATAGATTCTTGTCTTCCTCAAGGAGGCTGGACCATATAAAAAGACGCCACAGGGGCACCAAGGACTTGAAACACGCCTGCGAGCAGTGTGCAGCTCGCTTTGTTAGACCGTGCGAATTAAAGAAACATTATTTGTCTGTGCATTATTCAGTGGTTGAAGTACAGCCTGCTAAACGTGAAATCAATCCAGTGACGAGAAGGCTGAGAAATACTATTGAGAAAGATTAG
- Protein Sequence
- MELDPALPCILCRRCSDDTVAAITFKNLCALSAYHWADGSNYLSHTPSPTEDDKAFFILYNNEKTIVKDQIARVPTTKDAVDRLNMKWAKPVKTRRRRYRQGIIKEFCRCPDCGRKFSTPDYLNNHLRNTLTRACRRCRLVVNKKKLAKHLLKVHHVHVFECNVCNKLFDEAELMKQHVEEAHGKHMHSCSHCGNSFVNERALRAHVHSHSLFHCSSCNMSFNNVKCFKYHQQTCEVLHRPSVEFKHFTCDYCGVIYNRKPSLRIHIIQKHLNILPYVCQTCGKRTSTLAHLRSHEKVHKTERKVFQCCCGAQLTTELGFQLHQRIHTGERPYKCEHCGDRFLSSSRRLDHIKRRHRGTKDLKHACEQCAARFVRPCELKKHYLSVHYSVVEVQPAKREINPVTRRLRNTIEKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01340693;
- 90% Identity
- -
- 80% Identity
- -