Basic Information

Insect: Hyppa rectilinea
Gene Symbol: -
Assembly: GCA_951799385.1
Location: OX637330.1:9456883-9488884[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.32 29 6.3 0.6 1 23 345 368 345 368 0.95

2 12 0.32 29 6.3 1.4 1 23 390 412 390 412 0.96

3 12 0.0006 0.056 14.9 0.9 1 20 419 438 419 440 0.94

4 12 0.0061 0.57 11.7 1.0 2 21 447 466 447 467 0.92

5 12 0.00021 0.019 16.3 0.6 2 23 483 504 482 504 0.94

6 12 0.00062 0.057 14.8 0.3 1 23 509 531 509 531 0.97

7 12 0.032 2.9 9.5 4.8 1 21 540 560 540 565 0.93

8 12 1.2 1.1e+02 4.5 0.2 7 21 572 586 572 591 0.91

9 12 3.2e-05 0.003 18.9 2.3 1 23 599 622 599 622 0.93

10 12 0.0066 0.61 11.6 0.4 1 23 628 651 628 651 0.94

11 12 0.023 2.1 9.9 0.3 3 19 664 680 662 681 0.89

12 12 0.046 4.3 8.9 0.9 1 23 694 717 694 717 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.32	29	6.3	0.6	1	23	345	368	345	368	0.95
2	12	0.32	29	6.3	1.4	1	23	390	412	390	412	0.96
3	12	0.0006	0.056	14.9	0.9	1	20	419	438	419	440	0.94
4	12	0.0061	0.57	11.7	1.0	2	21	447	466	447	467	0.92
5	12	0.00021	0.019	16.3	0.6	2	23	483	504	482	504	0.94
6	12	0.00062	0.057	14.8	0.3	1	23	509	531	509	531	0.97
7	12	0.032	2.9	9.5	4.8	1	21	540	560	540	565	0.93
8	12	1.2	1.1e+02	4.5	0.2	7	21	572	586	572	591	0.91
9	12	3.2e-05	0.003	18.9	2.3	1	23	599	622	599	622	0.93
10	12	0.0066	0.61	11.6	0.4	1	23	628	651	628	651	0.94
11	12	0.023	2.1	9.9	0.3	3	19	664	680	662	681	0.89
12	12	0.046	4.3	8.9	0.9	1	23	694	717	694	717	0.97

Sequence Information

Coding Sequence: atgaAGGAAGTTAACATAAACATAGAAGGCTATAATGTTAACGGGATATGTGTCGGCTGTTTAAATTACAATCGTCGAATGTTTTATCACCCTACCGTAAAAGAATGTTTTCGTCTGCTTGGAAATATCGATGTGCCAGATGGTCTAGAAGTCCAGGTGTGCTGGGAATGCCTAGCGCGCGTCAAATCTGCTATGTACTTCAAGGATCAGATGCTAAAATCTTACGACTTCCTGATCTCGTACTCCAAAGAGCACACTTTTCTAGACTCGCCAAACGACTTCGGCCCTCACGCTATCACCAACATAGAGAGGACGGAGGTCGAGTGCTACGAGTGTCTGCCTGAGGCTGAGCTAGTGGAGGAGAATGAAGTAGGGGTTGATGTAAAGGAGGAAGAGGAGAACGAGAATAAATATGGATTTGAGGTAGCAATTAAGGAAGAAACCTTTGACGATCAATACTTCCAAGATATGCCGGCGGTAGACAACGATATCACATCGGATGAAGACATGCAGCTTTCTAAACTTAAAGAGAAAGAGACGGAGAAAGggaagaagaagaggaagagtgagaagaagaaagaaagggAGAGAGATAGGATGCCCGCCAACAAAAGGCCGAGGAAAACGACGCGAGGCCTCTATGACATATCACAGTTCGAAGCAGCGTATAACGAGAACGTAAATAACGGAGTGTCTATACGAAAAGCGGCTAAAATGTTTAATATCACCCCCGTCACCTTTCAAAGGTACAAAAAAAGACGAGAAGCCTCAAATTTCCCGATGCCCGCCAGCAAAAGGCCGAGGAAAACGACGCGAGGCCTCTATGACATATCACAGTTCGAAGCAGCGTATAACGAGAACGTGGACTCCCCAAAGCGCCAGAAGACAAAGAAGGATAAAAACCCCGACAAGAAGAGCAGGAAGCTAAAGAATCTACCAGAAGAGTTGGTTGAGTTGTACACTATAAGCAAAGAAGAGATGTGGGCTATCAGGATTGAGGACCTGAACAGCAAGGAGTTTCAGAAGCTTaaatatagGTGTGATGATTGTATTATTGCCTTCAACACTGAGAAATTAATGCACGACCATCTCAACGGAAAACATCAACCGGCCTATTTCCTGACCAAAGATAACGTGGCCGCCCACAAGGCATTACATCAACAAGGCTATAAATGTAGAGAATGTGGATTCAATACTACCCTGAAGCGACGCATGCTGAAACATGTTGCGTCTCATGCGCCGAGCGGAGATGCTCATGTGTGCCAGACTTGTGGGAGTAGCTTTAGCACAAAATCAAAGCTAACGTACCACCGAGGCGTGTGTTGTCAGGAAAGGCCCCAGTGTGACTGCTGCGGCAAAGTATTCGCCAATAAAATGACGCTGAAGTACCACCTCAAAATTTTGCCGCAGAATAAAGATGATAAACCGAAGGAAAAGCTATTCATACCGTGCAAAGGATGTGATAAAGTATTTCATTCTAAGAAGAGCTATAGAGCACATGTTGTTATTCACGATGGGTTAACCTACCCGTGCCCAATCTGTGGCAAGCTGTTCCAGTGGAAGCGCAACTTGGCGCGACACTCGCGCAACCATCGCGAGCGACAGGCGGGCAACTTGCACGAGTGCCGCGCTTGCAGCAAGACTTTCGCAAGTAGAGACTGCTACAATAACCACATGCGGCTCAGCAAGAAGCACGTGTCGCAAGATACTTTCCCCAAGACTTTCGCAAGCAGGGGCTGCTACAACAATCACATGCGGCTCAGCAAGAAGCACGTGTCGCAGGATACTTTCCTACACGAATGCAACTACTGTGGGAAGAAATTCGCTACAAAATGGTGCCTCACAGACCATATAGATTGGGATCACTTGAAGAAAATCAAATACCAGTGTAGCTTCTGTTTCAAGGCATTCAAAACAGCTAAAATATTAGTAGCTCATGTCAATAATATACATGAAGGAAAGAAAAAAGAGGCGGAAGGCGAACACTTGTGTGAAATATGCGGGAAATCATATAGGACAGTGAAACGTCTAAAGGGTCACGTGTGGGCGATGCACACCAAACGGTCCAACAGCAAGATCTACAAATGCAAGCTGTGCCCGGCGACCTTCATGTGGCAGACCAGCATATACAAGCATATGAAGATGATGCACGACAACAATAAGAAGACCAAGACACCTCGCGCCGTGCAACCAGTAAAGAAAGAAGAGCcctacccgggaatcgaactggcGAACCGGATGCAGTATTTCCAACAGAACATTGGAGGCAACTTAAATATAGTTCATATACAACCTTTAGGAATGACACAAAACATCGTTTAG
Protein Sequence: MKEVNINIEGYNVNGICVGCLNYNRRMFYHPTVKECFRLLGNIDVPDGLEVQVCWECLARVKSAMYFKDQMLKSYDFLISYSKEHTFLDSPNDFGPHAITNIERTEVECYECLPEAELVEENEVGVDVKEEEENENKYGFEVAIKEETFDDQYFQDMPAVDNDITSDEDMQLSKLKEKETEKGKKKRKSEKKKERERDRMPANKRPRKTTRGLYDISQFEAAYNENVNNGVSIRKAAKMFNITPVTFQRYKKRREASNFPMPASKRPRKTTRGLYDISQFEAAYNENVDSPKRQKTKKDKNPDKKSRKLKNLPEELVELYTISKEEMWAIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVASHAPSGDAHVCQTCGSSFSTKSKLTYHRGVCCQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHRERQAGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTFPKTFASRGCYNNHMRLSKKHVSQDTFLHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSNSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKTKTPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGMTQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -