Hrec028573.1
Basic Information
- Insect
- Hyppa rectilinea
- Gene Symbol
- -
- Assembly
- GCA_951799385.1
- Location
- OX637326.1:10670111-10677671[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3 3.1e+02 3.1 1.5 5 17 46 58 45 61 0.66 2 11 0.26 24 6.6 1.8 1 23 191 214 191 214 0.95 3 11 0.0034 0.31 12.5 1.5 1 23 235 257 235 257 0.98 4 11 0.028 2.6 9.6 0.3 2 23 267 288 266 288 0.95 5 11 0.013 1.2 10.7 0.1 2 23 294 316 293 316 0.96 6 11 5.9e-05 0.0055 18.0 0.9 1 23 322 344 322 344 0.98 7 11 0.00045 0.041 15.3 0.1 1 23 350 373 350 373 0.97 8 11 1.4 1.3e+02 4.3 1.1 1 9 382 390 382 405 0.79 9 11 9.6e-05 0.0089 17.4 0.7 3 23 415 435 414 435 0.99 10 11 2.5e-06 0.00023 22.4 2.3 1 23 441 463 441 463 0.98 11 11 3.7e-05 0.0034 18.7 2.5 1 22 469 490 469 490 0.93
Sequence Information
- Coding Sequence
- atggaGAAAATATGCAGATTTTGTTTGAAAGTATCTACTAAAAGCATGTGCAGCTTACAAGAGTGCGATATACTATATAGCATTCAAAAATTTCTAACGATAAAAATACCAACTGAACATTTGTTCCCGAGCAATATATGCAAAGAATGCTTTAAAAAAACATCGCAATTAATAAACTTCTGTATTACTGTCAAAGACAATGAAGATAATTTACAATACTATTTAAGAAATGGCCAACTACAAgattattattcaaaaattacaaacaatATACAACAAGAAGATGACcacaaagatttaaaaatagaaacaagTTATGTTGATGTTGAATATGATACAAAATCAATATGTGAAGATtacaatcatttaaaaaatgaagacttttttgaaaatggaaacaAGACGCCTTGTAGTTCTATTGATGAAGCAGGACTGGCCacagttaaaaaagaaaatgaaattaatatcattGCTCCATTAAAGAAGATAACAAAATTTAGACCTATAAAGTGTATAATTCctaaaaggaaaaagaaaaaagaacaggatgacaataaatatgtaaaaccgTTTACTTGTCTAACATGTTTAATAGAATGTAATTCTAAACCAGCCCTTACTAAACATTACTACTCTGAACACTtcttgaaaaatactggtaataaaaattatacagaACATAAATCCGAGGATAAGACTACGTACAGCTGTGACCGTTGTgataaaacatataatttgaaaaaagataTTGTGAAACATAGTATGACCCACACTAGTGACAATGATGAGAGACCTTTGATTTGTAAACTTTGTGCCAGAACATACCGGAGAGTTTCTGACATCGTTAGACATTCTAGAGCGCACAACGGCTTGAAACTGGAGTGCCCATTTAACTGTGGGTACACCACTGCTTACCAAGGAGCTATGAAAGAACATAAGAATATGCATTTGGATGAGTATAAGTATACCTGTAAGACATGCGGCAAGGGTTTCAACATAAAGACCTGGTATGAGCAGCATCAGAACATCCACACCGGACATAAGCCGTTTGTCTGCAATATATGTGGCAACGCCTTCCCTCTGGCCAGATATTTACAAAATCACAAGAGCACAGCACATCCGAAGTCATCAAGCGCGAAACGGTTCCAATGTCCTCATTGTGATGAGAAGTGGGGCTGTTCTAAAAGTCTTGCCGTACATGTTTTGGAGAAACatggtataaaaaaagaaactgaTTCTCTATGCGATTATTGTGGCAAAATTGTTGTATCTGAATCTCAATTGCAATACCATCATCGAATGCACTTAGGTGTGAAGCCGTACTCATGCAATTTATGCAAAAAGAGGTTTGCGAAGAAGTACAACTTGCAACTCCACATGACTATCCACACCGGTGACAACGCGCACATTTGTGTCCATTGCGGGAAGAAATACTCGCAGCGGAGCAGTCTGCTGAAACATCTTAAAAGGTAA
- Protein Sequence
- MEKICRFCLKVSTKSMCSLQECDILYSIQKFLTIKIPTEHLFPSNICKECFKKTSQLINFCITVKDNEDNLQYYLRNGQLQDYYSKITNNIQQEDDHKDLKIETSYVDVEYDTKSICEDYNHLKNEDFFENGNKTPCSSIDEAGLATVKKENEINIIAPLKKITKFRPIKCIIPKRKKKKEQDDNKYVKPFTCLTCLIECNSKPALTKHYYSEHFLKNTGNKNYTEHKSEDKTTYSCDRCDKTYNLKKDIVKHSMTHTSDNDERPLICKLCARTYRRVSDIVRHSRAHNGLKLECPFNCGYTTAYQGAMKEHKNMHLDEYKYTCKTCGKGFNIKTWYEQHQNIHTGHKPFVCNICGNAFPLARYLQNHKSTAHPKSSSAKRFQCPHCDEKWGCSKSLAVHVLEKHGIKKETDSLCDYCGKIVVSESQLQYHHRMHLGVKPYSCNLCKKRFAKKYNLQLHMTIHTGDNAHICVHCGKKYSQRSSLLKHLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -