Hrec031317.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyppa rectilinea
Gene Symbol
-
Assembly
GCA_951799385.1
Location
OX637330.1:654290-669101[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.046 4.3 9.0 0.3 1 23 252 275 252 275 0.96
2 11 0.0013 0.12 13.8 0.9 2 23 283 304 282 304 0.97
3 11 0.24 22 6.7 1.4 1 23 308 330 308 330 0.96
4 11 0.27 25 6.5 8.2 1 23 335 357 335 358 0.95
5 11 0.014 1.3 10.6 0.1 3 23 365 386 365 386 0.98
6 11 0.0006 0.056 14.9 0.2 3 19 395 411 394 414 0.93
7 11 0.15 14 7.3 0.7 1 23 420 443 420 443 0.93
8 11 1.6e-06 0.00015 23.0 1.6 1 23 449 472 449 472 0.98
9 11 0.0023 0.21 13.1 0.6 2 23 487 508 486 508 0.96
10 11 2.2e-05 0.002 19.4 2.4 1 23 514 536 514 536 0.98
11 11 6e-05 0.0056 18.0 0.9 1 23 542 564 542 564 0.97

Sequence Information

Coding Sequence
atgtctttagTAATGCTTAAAAACGAATTCAATGAAAATTTATTCGCGTGCAGAGCTTGTTTGGCAACGAATAGGAAGTTGTATAGCATACATCAAGAAGAACTTTTCAAAGCTTATAGGAGTCTTACGGGATTTgaaGTCTGTCCGTATGACACTCTACCGCAGTACATCTGCAACTACTGCACACTCCTGCTGCTAAAATATAACGCATTCAGGGATCACTGCCATAAGGCTACTAGCTATTTAGAAGATGTCCGAGAAAGAAATAAGAATATAACACCAGACTATTTAAACAACTTTCAACCTTATATACAATATCAACAgtcagaaataaaacaaattagcaTCCATAAAAATGACATCACCAACGAAAGCGTTCCAGTATTGAAAATTGACAACAGCGATGATCATTTTGACAATTACAATGACGACTACACATACCCGCCACAAAATactgaaaacataaaaatatacgctgaaacggtcaaaattaaaatcgaaaATGAATCACCGAACACATTttcagaaaaaacaaaaaaaaatgtccataaaaagaaaaaatgtacgCCACTAAGAAAGAAATGTACAAAAAAGTCTGAgacggttaaaaaaaaagggaaattctttgaaacaaaagaaaatatgtcCGATTTTGAGAAAGCTTTTGATGTTGATATAGTTGTGTTGAGCGAGGAACAACAAATGAAAGATGTACTAGATAGAAAGGCCAGTCCGAATTATCTTCATAGCCCTTATAAATGTGAGCTATGTTTTAAAGGATATATGAGCGctgatattttgaataaacacGTTTTATCCCAGCACGACccaAGTCGCGGTAACGTAGTATGTGAATTCTGTCAATTCCGTTACACTGATCGCCGCGGTTTGAACCAACATCTTAAAAGCCATCGCCTGAAATTCGCTTGTAAACAGTGCCCATATATTTCAAAAACAACTTTCAATGCTAAAGAACATTTCAAAATGCATGGAGGACAAATGCACGAATGTCGACACTGTGGAAAATCTTATGAAAAACTGTCCAGCCATCTCTCTCACTTACGCATCCACCATCCCTCTGAGTTCATCTGGTGCGACGTGTGTGGAGAAGCCTTTATCGGCACTTTCGGACTTAATGCGCATAAGAAGAGAGCACATCGGCACCTCCCCCTGCCTGCCGCGTGTCTCACTTGTGACAAGCGCTTCGTCGACAACTCGGCGTTAGAACGTCATTCCACGCGTGACTTTTGTGGCGAGCACACGTGCCTACATTGTGGAGACGCGTTCACTGCAGCGTTGGAGTTAAGAGATCATTTGTTGGAGAAACATCGGAGTTGTAAGGTTTATTCTTGCGAGAAGTGTGACAAGACATTTTCCCGTGAATCCTTATACAGTGCCCACTACAGAAGAATACACGTGGACTCTAAAGATAAACCTGTTCGTAAGGAGAGGCCCTGGGTGTGCGAAGTTTGTGGGAAGACATTACCGAATAAATGCGTGTTACTATACCATCAGAGGAACCACACCGGAGAGAAGCCGTACCACTGTGCGCAATGCCCCAAGAGTTTTACTATGAGGAAGTTATTGCAGtCTCATTTAAGGGTACACACTAGTGACCGTCCCTACACCTGCAAGCTATGTCCGAAAGCTTTTAAAGGTTTATCAGCCTTAAGGACACATGAGCatatacaCACGGGCGGACAGACAAAATTATCATCGAAGAATAGATACGTAACGTAA
Protein Sequence
MSLVMLKNEFNENLFACRACLATNRKLYSIHQEELFKAYRSLTGFEVCPYDTLPQYICNYCTLLLLKYNAFRDHCHKATSYLEDVRERNKNITPDYLNNFQPYIQYQQSEIKQISIHKNDITNESVPVLKIDNSDDHFDNYNDDYTYPPQNTENIKIYAETVKIKIENESPNTFSEKTKKNVHKKKKCTPLRKKCTKKSETVKKKGKFFETKENMSDFEKAFDVDIVVLSEEQQMKDVLDRKASPNYLHSPYKCELCFKGYMSADILNKHVLSQHDPSRGNVVCEFCQFRYTDRRGLNQHLKSHRLKFACKQCPYISKTTFNAKEHFKMHGGQMHECRHCGKSYEKLSSHLSHLRIHHPSEFIWCDVCGEAFIGTFGLNAHKKRAHRHLPLPAACLTCDKRFVDNSALERHSTRDFCGEHTCLHCGDAFTAALELRDHLLEKHRSCKVYSCEKCDKTFSRESLYSAHYRRIHVDSKDKPVRKERPWVCEVCGKTLPNKCVLLYHQRNHTGEKPYHCAQCPKSFTMRKLLQSHLRVHTSDRPYTCKLCPKAFKGLSALRTHEHIHTGGQTKLSSKNRYVT