Hrec001930.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyppa rectilinea
Gene Symbol
-
Assembly
GCA_951799385.1
Location
OX637300.1:30756069-30775438[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00083 0.077 14.4 5.7 1 23 373 395 373 395 0.99
2 11 0.00011 0.0098 17.3 1.4 1 23 401 423 401 423 0.98
3 11 0.00011 0.01 17.2 1.7 1 23 429 452 429 452 0.96
4 11 0.047 4.3 8.9 3.3 1 21 458 478 458 480 0.95
5 11 0.0011 0.1 14.1 3.8 1 23 486 508 486 508 0.99
6 11 2.3e-05 0.0021 19.4 5.3 1 23 514 536 514 536 0.98
7 11 0.0071 0.66 11.5 1.0 1 23 544 567 544 567 0.97
8 11 0.028 2.6 9.7 4.3 2 23 574 595 573 595 0.96
9 11 5e-05 0.0046 18.3 2.8 1 23 601 623 601 623 0.99
10 11 5.6e-06 0.00052 21.3 1.6 1 23 629 652 629 652 0.96
11 11 4.7e-05 0.0044 18.3 6.0 1 23 666 688 666 688 0.97

Sequence Information

Coding Sequence
ATGATGGCCTGGCTGGAAGGCCAGACCCGTCGGGTTATAGACAACCCTGAGGAAGTTTTAGCGGGCCAGGAACACCCGGCAAGCTTAAACAGCGAGGACGAGTCACCCCCAACCAACATAATTCAGGGTGAAGTCGTTTGGGACGTGCCTGCGAGCCAGGCGAGCCTGGCAAACCCAGGCAGTGTGGCAGGTCCAAGCAAGGAGACAGTATCTAAGTCGAAATCTTATATTGTAATTACCCCTCAGGGGGATTTAATTGAAAAAACTCTTGACAAGCCACCCAGCCACAATAAGGATAATGTTCAGATAAAAGACGTTTTGGTCATTCCACCGAAGCAAATAGTTGAAGCAGCAACAGTAAGCGAGGAGTCCCTGCCAAACCAATTCAAAATAGTTGAAACAAGTGACGTAAGCCAGGATAGCCCGGATAGTCAAGATTGCCCGGATAGTCAAGATTGCACGGATAGTCAAGATTGCCCGGATAGTCAAGATTGCCCGGATAGTCAAGATTGCTTGGATAGTCAAGATTACCCGGCTAGTCAAGATTACGCAGAGAGAAAAAGCCCAAAAAAGGTCGCAAAATTAATAACCATGCCTCCAGATAAAAAGGAGAAGAGCAAGGAAGCGCTCATTCAATCATACTTGAACCAAGACGCAGTCATCACAGTCAATGCCGCATCGGATGAAAAAGGCATGCCCTCGGGACTGGTCGAGTACTACGTAGACGAAAATGGCAAGTACTACTACAAGTCAACAGTGGACGGAGAAGCTTTGGCTGTGGATGATTCCGAAGGCAACCAAGAGGCTGAGGTTGCCGCTGAAGGTTCCGACGCGATACTAACTGATCAGGAGGAAACATACCAAACGGTAACGTTGGTCCCTTCTGAGACCAATGGGGAGGTTAGCTATGTGCTGGTAGTACAAGACGAGACCCAGGGGGTCGTCAATATTGATCTCAAGATGGACCAGTCTGAAGTGGAGGAGAAAGGCAACGACGATGTGTACAACTTCGAAGATGAGGAGGCTGGCGAGGAAGATGAGGAAGAGGAAGTGGAGGTGCCTGATGGCAGGCCCAGGACCACGCAGAAGCGAAGCCTCGCTCACATGCGGCCAAACTACACCTGCAACTTCTGCAACTACACCAGTCATCGCAGGTACCTTCTGCTGCGCCACATGAGGTCCCACTCGGAGGACCGCCCGCACAAGTGCAGCGTGTGCGAGCGCGGCTTCAAGACCATGGCTTCGTTGCAGAACCACGTCAATATGCACAACGGCATCAAGCCGCACGTCTGCAAGTACTGCAACAGCCCCTTCACCACCTCGGGCGAGCTGGTCCGCCACGTGCGTTACAAGCACACGCACGAGAAGCCGCACAAGTGCACGGAGTGCGACTACGCGTCTGTCGAGCTGTCCAAGCTGCGCCGCCATGTGCGCTGCCACACCGGCGAGAGACCCTACCAATGCCAGCACTGCACGTACGCGTCCCCGGACACGTTCAAGCTGAAGCGTCACCTGCGCACGCACACCGGCGAGAAGCCCTACAAGTGCGAGCACTGCAACATGTGCTTCACTCAGTCTAACTCGCTGAAGGCCCACCGGCTCATCCACAACGTATCTGAGAAGCCGGTGTTCTCGTGCGAGCTGTGCCCGGCCAAGTGTGGCCGTAAGACGGATCTGCGCATCCACGTGCAGAAGCTACACACTTCGGACAAGCCGCTGAAGTGCCGCCGCTGTGGTAAGAGCTTCCCGGACCGCTACTCTTGCAAGGTGCACAATAAGaccCACGAGGGAGAGAAGTGCTACAAGTGCGACCTGTGTCCATACGCGTCGACCACGCAGCGCCACCTCAAGACGCACATGCTGAAGCACACTGATGAGAAGCCGTTCGTCTGCGACTTGTGCGATCAGTCTTTCAGGCAGAAGCAGCTGCTCCGTCGCCACCAGAACCTGTACCACAACCCCAACTACGTGCCGAAGCCGCCGAAGGAGAAGGCGCACTCTTGCCATGAGTGCCACCGCATGTTCGCGCACAAGGGCAACCTCATCCGCCACTTGGCTGTGCACGACCCGGAGTCTGGCCACCACGAGCGCGCGCTCGCCCTCAAGATCGGGCGCCAGAGGAAGGTGCGGTTCGTCGAGGGAGACTCTATGAGGGACATTCGCGTCCTGGACAACGCCGAAGCTGAGGACATGATGAAATTGGGTCTCACCAAGAACAACCTGAAGTGCGGTGAGCTGGTGACTGTGGGCGACAGCGACGGCCAGCAGTATGTGGTGCTGGAGGTCATTCAGCTGGAGGATGGCACTGAGCAGCAAGTCGCTGTCGTGGCACCAGAGTACAACATGGATGAGGATGAACCTGAagaagacgaagaagaagaggagCAGGAAGTAGAAGAAGAAgaggaggaggaggaggaggaggaggaggaTGAAGAAGGCGAGGACAAGAGCTTCGTAGTGAAGGACTCTACTGTTGCCTCCACGAGCATCAAGCTTGAGAAAGAGGTCGACACGTGTTTTGGATTTGATGAGGAAGAAGAAGATCCCGAAGATGAGAATTACACGGATAAAGTTGTGTTGAGTTTGGTGTAG
Protein Sequence
MMAWLEGQTRRVIDNPEEVLAGQEHPASLNSEDESPPTNIIQGEVVWDVPASQASLANPGSVAGPSKETVSKSKSYIVITPQGDLIEKTLDKPPSHNKDNVQIKDVLVIPPKQIVEAATVSEESLPNQFKIVETSDVSQDSPDSQDCPDSQDCTDSQDCPDSQDCPDSQDCLDSQDYPASQDYAERKSPKKVAKLITMPPDKKEKSKEALIQSYLNQDAVITVNAASDEKGMPSGLVEYYVDENGKYYYKSTVDGEALAVDDSEGNQEAEVAAEGSDAILTDQEETYQTVTLVPSETNGEVSYVLVVQDETQGVVNIDLKMDQSEVEEKGNDDVYNFEDEEAGEEDEEEEVEVPDGRPRTTQKRSLAHMRPNYTCNFCNYTSHRRYLLLRHMRSHSEDRPHKCSVCERGFKTMASLQNHVNMHNGIKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCQHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVSEKPVFSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCYKCDLCPYASTTQRHLKTHMLKHTDEKPFVCDLCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKAHSCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVRFVEGDSMRDIRVLDNAEAEDMMKLGLTKNNLKCGELVTVGDSDGQQYVVLEVIQLEDGTEQQVAVVAPEYNMDEDEPEEDEEEEEQEVEEEEEEEEEEEEDEEGEDKSFVVKDSTVASTSIKLEKEVDTCFGFDEEEEDPEDENYTDKVVLSLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-