Hrec009059.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyppa rectilinea
Gene Symbol
-
Assembly
GCA_951799385.1
Location
OX637306.1:11330527-11331819[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.27 25 6.5 0.4 1 21 15 35 15 36 0.92
2 11 0.00027 0.025 16.0 2.1 2 23 89 110 88 110 0.96
3 11 1.8e-08 1.6e-06 29.1 3.7 1 23 115 137 115 137 0.98
4 11 0.00021 0.02 16.3 0.9 1 23 159 181 159 181 0.98
5 11 5.6 5.2e+02 2.4 0.1 5 23 193 212 187 212 0.84
6 11 0.00054 0.05 15.0 0.6 1 23 217 239 217 239 0.98
7 11 2.3e-05 0.0022 19.3 1.4 1 23 253 277 253 277 0.94
8 11 0.04 3.7 9.1 2.3 3 23 281 301 280 301 0.93
9 11 0.0015 0.14 13.6 3.8 1 23 307 329 307 329 0.98
10 11 1.3e-07 1.2e-05 26.4 2.2 1 23 334 356 334 356 0.98
11 11 1.8e-05 0.0017 19.6 1.2 1 23 362 389 362 389 0.97

Sequence Information

Coding Sequence
ATGGCTCACGTATTGGTATTGGATTCAATTGATgcagatatttttgtttgcggaACATGTAAAGCTGTTTTTAACTCCTTACATGTATTCCTGGATcacaaaaggttaaaatgtAACAATATCATTTCGGAAGAAAGCCTTACGAATTCCAATTTGGTGCAGAAAACAGTTAGTAGTGAACCCTTTTCTGAAAGCTTGGCGACAATACATCAAGGCGCTGAGGTCCCCGAGTCCGCGCCTGAACAGATATGGCCTAAAGATCTTATTTGTTCTACATGCAAGAAAAAGTTCAAAAAGATAAAAACCTTGCTAGCTCATTTGAAAACACACAGTGAGAAACCTTACCAGTGTCCCATATGTGGGCGCTGTTTTGTTCAAAATTCCCACTTGCAGAGACACTTATCATCTCATCGCATGTGGCCAGATGGAGTCAAGGAAACTACAGCAAGAACTCCTGAAGAAGAACTTTTAAGCTACACATGTCCATATTGCAAATTGATTTTGGTTAATTACAGTCAATACAGAGCTCATCAGAAGAACCATTTatctctaaaaaaatataagtgcaTTCAAGGGGACTGTATGGAGTATTTTGATACAATTGATAGTTTACTTCAGCATGTGTCTACTTTGCATGACTGCCCGGTTTATACTTGCCATATATGTAGCTCCTCATTCAGCAGCTTGGAAGACATTGCATCACACCTGCAGATTCATATTGATGTGGCTAAAGGCAAAGAAACAAACTCGAACATATACAAATGTTCACAATGTGATGCTAGGTTTCGTAAATCAGAGAAACTAACCCTGCACATGCAAACAGAGAGCCATAATAAAATGTGTATCCATTGTAACAAGACATTTGCTAGTGATAAGAGATTACGTCTGCACTTACAGATACACAGGACTTTCAAACCATTTCAGTGCAATATTTGTAGCAGCAGTTTTCATATGAAGAAATACTTGGCGACACATATGCTAAAACATGGCAGTAGGCAGTTCAAATGCTCTGTTTGCAAATATACATTCAAAAGGCCAGATTTGCTTCAAAGGCACATGAAGTTACATCAGGCTAAGAAAATGTTTAAGTGTCCATTTAAAGAAGCTTTGGATTGTAAGAAGGAGTTTAGTCGTACTGATAAACTAAAATCTCATATTAAgtcccacacaaaaaaaattgctcaaCATACAAGTTGTAAAACTATTGTGTTGCAGAAAAATGATACTGTAGAGAATTGCACAGCCCTTTTAAATACAAACTCCATTCAACAAGTGATAGGAAGAAGGTGTTAA
Protein Sequence
MAHVLVLDSIDADIFVCGTCKAVFNSLHVFLDHKRLKCNNIISEESLTNSNLVQKTVSSEPFSESLATIHQGAEVPESAPEQIWPKDLICSTCKKKFKKIKTLLAHLKTHSEKPYQCPICGRCFVQNSHLQRHLSSHRMWPDGVKETTARTPEEELLSYTCPYCKLILVNYSQYRAHQKNHLSLKKYKCIQGDCMEYFDTIDSLLQHVSTLHDCPVYTCHICSSSFSSLEDIASHLQIHIDVAKGKETNSNIYKCSQCDARFRKSEKLTLHMQTESHNKMCIHCNKTFASDKRLRLHLQIHRTFKPFQCNICSSSFHMKKYLATHMLKHGSRQFKCSVCKYTFKRPDLLQRHMKLHQAKKMFKCPFKEALDCKKEFSRTDKLKSHIKSHTKKIAQHTSCKTIVLQKNDTVENCTALLNTNSIQQVIGRRC