Hrec027652.1
Basic Information
- Insect
- Hyppa rectilinea
- Gene Symbol
- -
- Assembly
- GCA_951799385.1
- Location
- OX637325.1:1959240-1979546[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.1 7.5e+02 1.9 1.8 6 16 58 68 55 70 0.80 2 12 1.1 1e+02 4.6 0.2 1 23 503 525 503 525 0.95 3 12 0.00027 0.025 16.0 0.5 1 23 537 559 537 559 0.96 4 12 0.00015 0.014 16.8 1.2 1 23 565 587 565 587 0.98 5 12 1.3e-05 0.0012 20.2 2.3 1 23 594 616 594 616 0.99 6 12 2.3e-06 0.00021 22.5 0.4 1 23 622 644 622 644 0.93 7 12 6e-07 5.6e-05 24.3 0.2 1 23 650 672 650 672 0.98 8 12 2.3e-05 0.0021 19.4 2.7 1 23 678 701 678 701 0.96 9 12 0.0001 0.0095 17.3 2.6 1 23 707 730 707 730 0.96 10 12 0.00014 0.013 16.9 2.3 2 23 737 758 736 758 0.97 11 12 1.1e-05 0.001 20.4 1.0 1 23 764 786 764 786 0.97 12 12 0.029 2.7 9.6 0.1 1 23 792 816 792 816 0.93
Sequence Information
- Coding Sequence
- ATGAACCTGTGTTGCTTTATCTGCAACACCAAGGCTGGTCTCTCGCTTAGAAACGCTTCCAGCCTATTTGGAGAAcatAACACATTTCTATCAGGTAAGAAAGTGTCAGATGTCGTGAGTGAGATCGTGGGCAAGCCGGTGCTGGAGAATAATGTACATACAAATATACTGTGCAAGAAATGCTTTAAGACTTGTTCCGAGTTCGACAGCATTCAAGTCAGATTACAAACCATAAAAACGGATTTACTAGGACAATTCAAATTATCATTACCTAATCATAATTTAGACTATGAAAACTACGAGAAGAATGTATGTTCACCGCCGCAGCCTAAACCAATCCTGGGAAAGAAGTTGGTGTTGCCAGCATCAAAATTACAACCAATACCACCGGATTTGTTGCTCAAAGTGGGAAAATTGGCATCTTACACCAAATCTAACATGATTTTACCACAACTTAAGCCGTCCATAGCCTCAACATTAAACTTAAAAGTGACTGTTGGATCATCAGTTCTGacacaaacaataaaaacttcaaCCAGCAAATCGATTGAACAACCGACTTTAGACTCAAATTCCATCCTGACTTCGCTCTCAAATGCCTTGAAAGATGATCTAGAAAGTATGGTGACTACTCAGAGTAATATGAACCCAATGAgccaaaataattcaattttgaGTTTCAATGTAAACTCTTTGCCTAAAGATTTTCTTTCTGGTgctattttaaggaaaattgataaaaaagAGGATGATTATGAAAAGCAGGAGGAAGGGAATAATGATAATTCTATGGAAATTGATGAAGATTGTTTGTCTGTGGTTCCTGTAACGTCTACTGATGGTGGAAACTTGGTGCTGCAAGTTGAAGGACTGCAGTCAAAATCGGACTCTACAGTATCTACGGAAGTGAGCGATTACCTCAACCTGCCCTCGCTAGGTGGTGAGGAGTGCGGGGACGAAGAGAGCGACACACAGAAGTACATCCTCGGCAAGTTGGAGATACTGAACGCGGAGGAAGAAGACGATGACGATGAAGAAGGACacacaatagTCGTGGACAGTGAAAACGGCTCAATTCTCCGGATGGTGGCCGGACAGAAGTTTATCTATGAGGGCGGGGAGATATCGTTAGTGATGCCTGAAGAAGATGATGAGCAACAAGATGTCGACGGTGATCCTCTCGAGAATGGCGACAGTCAAGATTCTAATGACGATTCTCAGATCGAGTTGCAAGTATCTGGCGACGAGGAAACTGCGAACGCTATTATTGCAGCCGCTCAAGAACAAGGTGGTGCTTTTATAAAGGTGGAGTCAGGCGAGATGTTCCGCGTGAAGTCTGTGTCGAGCGCAACGCCCGAGTGGCCCGACGCGCCGCTGCAGATCGTGGCGCAGGAGGGCAACCAGTTCAAGTGCTTGCTGTGCGACAAGAATGATGAGACTCCTCCGATTGTTGAAGATGCAGACACGATGATGCGTCACTTAAAATCTCAGCACGACGCGAGAATATACCTGTGTCGCTTCTGTGGTGCCGTCATGAGGAAACGAACAGAATATGCCACGCATATAGCATCGCACGCGACCACTTCGCCGTCCACTCGTGGAGGAGCGCACCGCTGTGGCGCGTGCGGCAAGAGCTTCAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGCCTGCGCCACCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCACATGAAGACGCATGCCGTTCGCCCGCGTCCCTACAAATGCAGTCAATGCGGTAAATCGTTCCTGACGCAACAAAATCTCAATCAACATGAGAAAACACATTCAGGAGTCAAGGATTTCGTCTGTAATATATGCAACAAGGCCTTCAGCACGCAGCATAACTTGGAAGTGCACGGCGTGGTTCACTCCGGGAACAAGGCGTTTGTGTGCAGTGTTTGCAGCAAGGCGTTCGCCAGGAGAGCTGAGTTGAGGGACCACATGCGGATACACACCGGCGAGCGTCCATTCTCGTGTGACATCTGCGGGTCTCGCTTCACGCAGCGCTCGAACCTACACTCGCACCGCCGAGCAACGCACTTCGACGACAAACGATACCACTGCGAACTGTGCCCGAAGAGGTTCAAGAGGAGGAGATTACTAGAATACCACATAAAGGCGTCACACACAGGCGAGCGGCCACTGAAGTGCGGCGTCTGTCATCTGTCCTTCGTGTACCCTGAGCATTACAAGAAACACGTGCGGATACATAGCGGGGAGAGGCCTTATGTCTGTGAGATCTGTGGCAAATCGTTCAATTCCCGCGACAACCGCAACACGCATCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGTGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAGCTGCTGTACGCGCACATGAACACCAGCGGACATTTGGCGGAGTCTATAGTAGTCAATCAACCCAGAGTTATCAAAGTTACTGAAAATGAATTATATGTAAGTACAATATAA
- Protein Sequence
- MNLCCFICNTKAGLSLRNASSLFGEHNTFLSGKKVSDVVSEIVGKPVLENNVHTNILCKKCFKTCSEFDSIQVRLQTIKTDLLGQFKLSLPNHNLDYENYEKNVCSPPQPKPILGKKLVLPASKLQPIPPDLLLKVGKLASYTKSNMILPQLKPSIASTLNLKVTVGSSVLTQTIKTSTSKSIEQPTLDSNSILTSLSNALKDDLESMVTTQSNMNPMSQNNSILSFNVNSLPKDFLSGAILRKIDKKEDDYEKQEEGNNDNSMEIDEDCLSVVPVTSTDGGNLVLQVEGLQSKSDSTVSTEVSDYLNLPSLGGEECGDEESDTQKYILGKLEILNAEEEDDDDEEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPEEDDEQQDVDGDPLENGDSQDSNDDSQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSATPEWPDAPLQIVAQEGNQFKCLLCDKNDETPPIVEDADTMMRHLKSQHDARIYLCRFCGAVMRKRTEYATHIASHATTSPSTRGGAHRCGACGKSFSSRTLLAEHANLHSGARPYACATCGKAFASKYTHQAHMKTHAVRPRPYKCSQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCSKAFARRAELRDHMRIHTGERPFSCDICGSRFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGVCHLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENELYVSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726717;
- 90% Identity
- iTF_00726717;
- 80% Identity
- -