Basic Information

Insect: Hyppa rectilinea
Gene Symbol: -
Assembly: GCA_951799385.1
Location: OX637320.1:6891715-6907631[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.48 44 5.8 0.8 6 20 12 26 6 28 0.86

2 14 0.11 9.9 7.8 0.2 2 20 34 52 33 54 0.93

3 14 0.78 72 5.1 0.5 1 12 211 222 211 231 0.83

4 14 0.18 16 7.1 0.2 1 19 367 385 367 385 0.98

5 14 0.00024 0.022 16.1 0.4 1 23 392 414 392 414 0.98

6 14 1.6e-05 0.0015 19.8 0.6 1 23 428 450 428 450 0.99

7 14 2.5 2.4e+02 3.5 0.4 1 8 475 482 475 496 0.88

8 14 0.0003 0.028 15.8 0.3 3 23 504 524 502 524 0.96

9 14 0.00087 0.081 14.4 2.3 1 23 540 562 540 562 0.98

10 14 1.6e-06 0.00015 23.0 4.5 1 23 568 590 568 590 0.98

11 14 0.0048 0.44 12.1 5.3 1 23 596 618 596 618 0.97

12 14 1e-05 0.00093 20.5 0.4 1 23 624 646 624 646 0.98

13 14 0.00088 0.081 14.4 0.3 1 23 650 672 650 672 0.98

14 14 0.00022 0.02 16.3 0.1 1 23 680 703 680 703 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.48	44	5.8	0.8	6	20	12	26	6	28	0.86
2	14	0.11	9.9	7.8	0.2	2	20	34	52	33	54	0.93
3	14	0.78	72	5.1	0.5	1	12	211	222	211	231	0.83
4	14	0.18	16	7.1	0.2	1	19	367	385	367	385	0.98
5	14	0.00024	0.022	16.1	0.4	1	23	392	414	392	414	0.98
6	14	1.6e-05	0.0015	19.8	0.6	1	23	428	450	428	450	0.99
7	14	2.5	2.4e+02	3.5	0.4	1	8	475	482	475	496	0.88
8	14	0.0003	0.028	15.8	0.3	3	23	504	524	502	524	0.96
9	14	0.00087	0.081	14.4	2.3	1	23	540	562	540	562	0.98
10	14	1.6e-06	0.00015	23.0	4.5	1	23	568	590	568	590	0.98
11	14	0.0048	0.44	12.1	5.3	1	23	596	618	596	618	0.97
12	14	1e-05	0.00093	20.5	0.4	1	23	624	646	624	646	0.98
13	14	0.00088	0.081	14.4	0.3	1	23	650	672	650	672	0.98
14	14	0.00022	0.02	16.3	0.1	1	23	680	703	680	703	0.96

Sequence Information

Coding Sequence: atgggACGCCAGCCGTTGAATTGCCCCGTTTGTTGCAATACGACTTTTAATTCTAAACAATCTCTGCTGGAGCACTTGACCAATGCTTTAGAGAATGTATATTGTCCTGTTTGTAACCAGAAATGTCCCTCATTACCACACCTTGTAGAGCATTTGGCTCAGGATGATTGTCAGCCAACTAATAATATACAAACCTATATAATTGAGCGCCGATCAGATGAGGACAACATCGAAAATACATCAGATAATGGAAATTCTGAAATTAAAGTTTATCAGAATGAAGTAAATACTAATGATGGGACTCAGTTTACAACTGGATCAGCTTACGAAGCTCAGGTCATGAATGATGACAACAAAATGTATCTGGAATTGTTTAGCAAACACTTGAAACCATGCCTCCAAACAAGGGAATTTAaactggtgaaggaaaacggGGAAAGCCGATACATGATTGTCACTCAGGATGAAACCGATTTGAATGGTGGAAACACTATTGTTaccaaacaaaatattgatgGAACTATATCACTAACTACTGTTAAAGATTTTAACACAGAGCCAGAGAACATAGTTACACCAGACAATATACAAGAAAACCACGAGGTTAATCAAGAAAGCTGTCAGGAGATCTACAGCTGTAACACATGCAAAGTGTCATTCTCATCTGTTATAGAGCACATACAGAACTACCATAATGATCAGGATGTTGTTGTTGAGGAGCCATTGGAAGAGGGTCAGACTGAGTCAGTGCCTGACTACGAGCCAATAGAGAATGATGACACATTGGTGACCACAGACAAGCAGACACCACGCCGCGTCATAACTGACACGGGAGATATAGTGGAGGAACCGCTCATGTTTAAATCTAGTGATCAAATGATTTCGTCGGATCCTTCGAGCTTGGATCAAACGCATGAACCAAATAAAACGGCGGAAAAAGGACTGCGCGTCGTCACGAAGCGTTTTCTGCAAGTGGACAAACTTTGCAGCAGTGTCATCAAAGATGCCATTCAGGCTGACGCAAAAGatAGAGGCGGACCCTATCACAAGGTGATCGTCAAAGAAGTGCCCACGGAGAACGGATTTGCGATCAAAATGTACCAATGCTTATCCTGTGACATATCTGTCACCAATTTGGATGAGTTCAAAACACATCCATGTAAAGTATtaaaatatccGTGTCTTTACTGCCCTGTGGCGTATGAAAACTCGAAATCTCTGTGCGCACACATGAAAGCGCACAAAGTGAGAAcagagtctATCATCTCTGGGCCATTGTCATACGAATGTGCTGTATGCAACACGGTCTTCCCAACTAACAAGTCGTTGAAACTACACAAACGGATGCACGATCCAGTCAAATCACGTCCCATAGAGCCTCCGTTAGAAAACACAGACGGTTCAGAAGTGAGCGATAACAGATACCGATGTACTTACTGCAACAAATTGATCCCTATTGACTACAAGACTATCCACCAAAACTCGCACAAAACCTCGGATAAAATGAACTGCGGAATTTGTAATAAGAAATTCACATCCATTGAGTATCTAGAAATGCATACAAATGTACATAATGTGGATAAAGCGCCAATGAACAATCAAGATAAGAACCTACCATacagttgtttgtattgcaacAGGAGATTTGCGAGGCCGCACGAAAAAGTGAAACATGAAAGGATACATACAGgtGAGAAGCCCCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTCTCGTACTGCCTCACACTGCACATGCGCACACACACCGGCGCACGTCCATACGCCTGTGCGCACTGCGGCAAgagGTTCAAAGCACATAGCGTGTACAACCATCATCTGCTGACGCACTCCGACGTACGCGCCTACAAGTGCCCGTTTTGCCCCAAAGCGTTTAAGACCTCCGTGCAACTAGCTGGACACAAGAACTCGCACACCAAACCATTTTCATGTCAGCAATGTAATAGGCCATTCGCGTCCTTATACGCCGTGCGGGTCCACACAGAAACCCATGCGCGTCAGAACAACCTGAAATTCTCGTGTGAACTATGCGGCGCCAGCTACGCGAGAGCCTTCGCTCTTAAGGACCACATCAAGCAGGCGCACGGTGAACAGAAACAAGAGCAGTCGATTCCTGGCGATGAAGACTGGTTGACAAAAGACAATCCGGATGCGGATGGAATACCGGCACTTAACAAAGATTTGACGCACGagataGACCTGGGAATGAACGGCAGCGAACTGATAGTTCCTTAG
Protein Sequence: MGRQPLNCPVCCNTTFNSKQSLLEHLTNALENVYCPVCNQKCPSLPHLVEHLAQDDCQPTNNIQTYIIERRSDEDNIENTSDNGNSEIKVYQNEVNTNDGTQFTTGSAYEAQVMNDDNKMYLELFSKHLKPCLQTREFKLVKENGESRYMIVTQDETDLNGGNTIVTKQNIDGTISLTTVKDFNTEPENIVTPDNIQENHEVNQESCQEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPLEEGQTESVPDYEPIENDDTLVTTDKQTPRRVITDTGDIVEEPLMFKSSDQMISSDPSSLDQTHEPNKTAEKGLRVVTKRFLQVDKLCSSVIKDAIQADAKDRGGPYHKVIVKEVPTENGFAIKMYQCLSCDISVTNLDEFKTHPCKVLKYPCLYCPVAYENSKSLCAHMKAHKVRTESIISGPLSYECAVCNTVFPTNKSLKLHKRMHDPVKSRPIEPPLENTDGSEVSDNRYRCTYCNKLIPIDYKTIHQNSHKTSDKMNCGICNKKFTSIEYLEMHTNVHNVDKAPMNNQDKNLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACAHCGKRFKAHSVYNHHLLTHSDVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHGEQKQEQSIPGDEDWLTKDNPDADGIPALNKDLTHEIDLGMNGSELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440338;
90% Identity: -
80% Identity: -