Basic Information

Insect: Hyppa rectilinea
Gene Symbol: -
Assembly: GCA_951799385.1
Location: OX637323.1:4060455-4068667[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.6 7e+02 2.0 0.1 2 16 56 70 55 72 0.82

2 10 9.3e-05 0.0086 17.4 4.1 1 20 208 227 208 230 0.94

3 10 0.00026 0.024 16.0 0.7 1 23 236 258 236 258 0.95

4 10 1.2e-05 0.0011 20.2 2.0 1 23 264 286 264 286 0.98

5 10 9.4e-07 8.7e-05 23.7 0.8 1 23 292 314 292 314 0.98

6 10 1.7e-05 0.0015 19.8 0.1 1 23 320 342 320 342 0.96

7 10 4e-06 0.00037 21.7 0.7 1 23 348 370 348 370 0.98

8 10 0.00013 0.012 17.0 2.8 1 23 376 398 376 398 0.98

9 10 0.00038 0.035 15.5 1.6 5 23 407 425 405 425 0.94

10 10 6.4e-06 0.0006 21.1 5.5 1 23 431 454 431 454 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.6	7e+02	2.0	0.1	2	16	56	70	55	72	0.82
2	10	9.3e-05	0.0086	17.4	4.1	1	20	208	227	208	230	0.94
3	10	0.00026	0.024	16.0	0.7	1	23	236	258	236	258	0.95
4	10	1.2e-05	0.0011	20.2	2.0	1	23	264	286	264	286	0.98
5	10	9.4e-07	8.7e-05	23.7	0.8	1	23	292	314	292	314	0.98
6	10	1.7e-05	0.0015	19.8	0.1	1	23	320	342	320	342	0.96
7	10	4e-06	0.00037	21.7	0.7	1	23	348	370	348	370	0.98
8	10	0.00013	0.012	17.0	2.8	1	23	376	398	376	398	0.98
9	10	0.00038	0.035	15.5	1.6	5	23	407	425	405	425	0.94
10	10	6.4e-06	0.0006	21.1	5.5	1	23	431	454	431	454	0.97

Sequence Information

Coding Sequence: ATGGCGTtagattttacaaaaatatgtcgaaTATGTCTCGAAGCGAATAAAATAACATACGATATTTACACTAGTTATTATGTGAAAAAGAATACTTTATATTGTGATATGTTGATAAACTGCACTAAGTTAAagCCTGAAATAGGAGATGGTCTACCTCGTTTAATTTGTAAGGAATGTAGCCGACAGCTTAAACGTACCTACGCCTTTAATATACAATGCGACGAGAGTGACAAAAAGCTGAAATTTTTGTTAGAAAATCCGTCAAAGGAGGACAGTAAAAGAAATGGGTGTTCTGATGCTTTTGTCAAAGATGAACTGgattttgatgatttaaaattCGAGAATAGTCATGAAGCGAACGAGAAACTGTTATTGACGAATCTAGATGATAATAATCGAGATGATATCAAGGATATTAAACTTGAACCATTACTAAATGATGATGGGAACGACAGTTGCTGGGATGCTGATGATGACAATTTAGTGTTAGGAGAaatcaaaataagaaaaacaggTGATATTGCAAGTACGGAGGAAAAGCCAAAAAAGAAAAGAGGCAGAAAGAAAAaagTGTACCTAGAGGGTGAAGTTCCACAGTTACCGGAGAGCAAGCTTCCGCATCAATGTGACATTTGTGGCAAGTTCCTCAGCACCAAGAGTAATCTCAAGGCGCACAAGCTCTGCCATACTGATCTCAGGCCGTTTCTATGTCCTGAATGCCCTGCAACTTTTAGAGGCCACAGTGCATTATTTCAACATAAGAAAGTTCATACAGGTGAGACCCCGTACCATTGCACGTATTGCCCCAAACAGTTTGGCAGAAGAACTGGACTCGTCAACCATATACGTATGCACAAAGGGGAAAAATTGTACAGCTGTGAGATATGTTTCAAAACGTTTGTGCAGAGCGCTCAGCTGTCCATACACATGAAGCGACATAAGGGTGATAAGCCTTATCTATGTCAAGTCTGCGGGAAAGGTTTTCCTATCAAAGCAGAGTTAAAGGTGCACCAACGGATCCACAACGGTGAGAAGCCGTACTCTTGTCACCTCTGCGCCAAGACCTTTGCCACCTCTGGAAACTTATCCATACATGTTAGGATACATAATAAGGAAGTTAGATACAATTGTAAAGAATGCCAGCGCGGTTTTGTGACATGCAGCGCTTACAACGTGCATCTCAAAAGGCACAAAGGACAACGCGACTACCATTGCGAGTGTGGCAAGACCTTCTACACATCATCCGCCTTAAAACAACACAGGGTAGTTCACACGGGAGAAAAGAAATACCAATGCAAAATATGCGATAGAAAATTCACACAAACTAGTCATCTGAGCCGCCATTTTAAACGAGATCACGCTAAACCCAACGCACCTGTGCCTTCGTCGGATCATTATAAAGTGGTGTTAccagataataaaaatgtttttaatctgTTAGATAATACGATACAGAAAATTGGACAGAATATAAGTACAGATGTCAAATGTGAGGGGTCGTAG
Protein Sequence: MALDFTKICRICLEANKITYDIYTSYYVKKNTLYCDMLINCTKLKPEIGDGLPRLICKECSRQLKRTYAFNIQCDESDKKLKFLLENPSKEDSKRNGCSDAFVKDELDFDDLKFENSHEANEKLLLTNLDDNNRDDIKDIKLEPLLNDDGNDSCWDADDDNLVLGEIKIRKTGDIASTEEKPKKKRGRKKKVYLEGEVPQLPESKLPHQCDICGKFLSTKSNLKAHKLCHTDLRPFLCPECPATFRGHSALFQHKKVHTGETPYHCTYCPKQFGRRTGLVNHIRMHKGEKLYSCEICFKTFVQSAQLSIHMKRHKGDKPYLCQVCGKGFPIKAELKVHQRIHNGEKPYSCHLCAKTFATSGNLSIHVRIHNKEVRYNCKECQRGFVTCSAYNVHLKRHKGQRDYHCECGKTFYTSSALKQHRVVHTGEKKYQCKICDRKFTQTSHLSRHFKRDHAKPNAPVPSSDHYKVVLPDNKNVFNLLDNTIQKIGQNISTDVKCEGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746043;
90% Identity: iTF_01064902;
80% Identity: -