Basic Information

Insect: Hyppa rectilinea
Gene Symbol: -
Assembly: GCA_951799385.1
Location: OX637314.1:4126189-4131789[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.096 14.1 3.3 1 23 129 151 129 151 0.96

2 12 0.00054 0.05 15.0 0.4 2 23 157 178 156 178 0.96

3 12 8.6e-05 0.008 17.5 4.5 2 23 222 243 221 243 0.97

4 12 1.5e-05 0.0014 19.9 1.3 1 23 252 274 252 274 0.96

5 12 9.1e-05 0.0085 17.5 3.6 1 23 280 302 280 302 0.97

6 12 7.2e-06 0.00067 20.9 3.4 1 23 308 330 308 330 0.99

7 12 3e-08 2.8e-06 28.4 1.0 1 23 336 358 336 358 0.95

8 12 2.8e-05 0.0026 19.1 2.4 1 23 364 386 364 386 0.97

9 12 4.9e-06 0.00046 21.4 0.5 1 23 392 414 392 414 0.98

10 12 0.0034 0.31 12.5 6.4 1 23 420 442 420 442 0.97

11 12 1.8e-06 0.00016 22.8 2.1 1 23 448 470 448 470 0.98

12 12 0.00049 0.045 15.2 0.5 1 20 476 495 476 498 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.096	14.1	3.3	1	23	129	151	129	151	0.96
2	12	0.00054	0.05	15.0	0.4	2	23	157	178	156	178	0.96
3	12	8.6e-05	0.008	17.5	4.5	2	23	222	243	221	243	0.97
4	12	1.5e-05	0.0014	19.9	1.3	1	23	252	274	252	274	0.96
5	12	9.1e-05	0.0085	17.5	3.6	1	23	280	302	280	302	0.97
6	12	7.2e-06	0.00067	20.9	3.4	1	23	308	330	308	330	0.99
7	12	3e-08	2.8e-06	28.4	1.0	1	23	336	358	336	358	0.95
8	12	2.8e-05	0.0026	19.1	2.4	1	23	364	386	364	386	0.97
9	12	4.9e-06	0.00046	21.4	0.5	1	23	392	414	392	414	0.98
10	12	0.0034	0.31	12.5	6.4	1	23	420	442	420	442	0.97
11	12	1.8e-06	0.00016	22.8	2.1	1	23	448	470	448	470	0.98
12	12	0.00049	0.045	15.2	0.5	1	20	476	495	476	498	0.94

Sequence Information

Coding Sequence: ATGGTAGACTTAGCTACGTCGTGTCGGACTTGCATGAAGGACAATGTGTCTTTGGTAGACTTGTATGAAATAGTTGAAATTGAGGAAAATTGTCTCCAATTAGCCGAGGTACTTGTGCAGTGTACTCCGATTGAGgtttcCAAAGAGGATGGGTTACCACAACAACTTTGTGATGGCTGTGTCAAGGTGCTGCAACTTGCATACTCATTCCGTAAGCAGGCGGCGAAGGCACAGGATGAGTTTAAGAAACTCCTACAAACCAGTGTAAAAACAGAACCTCAAGACGTTGACCTCAAAATGGAGCATGATCATGACTATTTCGAAACTTATGACGATTTCAGTTTCAATCCTGATTTTTCCAAAACTGAAATCGAAGAAAGAGAATATACATGTACTAAATGCAATAAACAGTTTACAAAAGAGAAGAAATACCTGAAACATTTAGAAGCGCATGAGAATATATCACTAGAATGTGACATTTGTAAAAAGTTATATCCAAACCAAACATTGTTGGAAAAACACAGAGCCAAGCATGAAATGAATATATGTTTTGTTCATGATCAAAGTTTAATGAGCGATACATGTTTACTGGAAGATAATTCGGTGGATCACACTGAGGAAGTTGAAGTAAAAATTGAAGACGAGACACGGGCACTTGAATTAAAATGTACACACTGTAATCTTACGTTTATAAAGCAAAGATCACTCTCAATGCACATGAGAAAACATAGAGATAAAAATGAGAAGAAAGAATTCATTTGCGATACTTGTGGGAAGACGTTTCCCATGAAACATTTGTTGAAGCGGCATGTGGTGATGCACAGCGAAGTGAAACCACACAAATGTGAGAAGTGTTCAAAAACATACGCCCGACGTGATCAGCTGATGTCTCACTTGTACTCACATAAAGAACACAAGCCTTATGTCTGTGAATACTGCAAGAAAAGTTTTGCCCAAATGTGCAGTCTTAAAGACCATCTGCGTACCCACACTGGAGAGACCCCATTCCTGTGTTCAGAGTGTGGCAAAGGCTTCTCCAACAATTCCAACCTCAGGCAGCACATGATGAGGCATACCGGAGTCAAGCCCTATGCTTGTAACTTGTGCCCCAAGTCATTCTGTACTAAAGGTCAGATGAGGTCCCATGTGACCACGCACACCGGAGAACACCCTTACAAATGTGAGGAGTGTGGCGCTGCCTTCACCAAACAGAATTCTCTGAAGAAACACTCCATGATACACCTCGCTGTACGACCGTTTGCCTGCGAGACTTGTAATATGAGGTTCACCTGCAAAGATCACCTGAAACGTCACACAAGAATACATACTGGCGAGAAACCGTACAAGTGCAAGTATTGCGAGCGGGCGTTCTCTCAGAGTAATGACTTAGTGAAGCACACGCGCCAGCACATCGGACAGAACATATACCAATGCACAATATGCGGCTCCCGATTCCGTCTCCTATCAGAACTTAAGCAGCATTACCCAGTCCACTTCTCAAACGGCGACGAGGCCAATGACCCACAAATCAGTATCAAAGACAACATAGAACCGATCAACAACGAGGTTCCAAAACAAATGCCGATGTTACAAATTAAACCGCCAGAATTTAACCTACTGacctttaaaaatgataaagaTCTTCCTCCCCTTATCATGAAACCGCCGGAGGTTGTGAAGGACCTTCAGATGTTGTCTCTGAAGCCCCCGGAAAGCGATGACAGCGACCTCGTGCGGACCTGCCCAGAATCAAACAGATTTGTTATTACTATCAACAGTTGTGATACGAATGGGATTGTTAATGGGATTACAATTAAATTGCCGCCTAAAGAGAGCTAG
Protein Sequence: MVDLATSCRTCMKDNVSLVDLYEIVEIEENCLQLAEVLVQCTPIEVSKEDGLPQQLCDGCVKVLQLAYSFRKQAAKAQDEFKKLLQTSVKTEPQDVDLKMEHDHDYFETYDDFSFNPDFSKTEIEEREYTCTKCNKQFTKEKKYLKHLEAHENISLECDICKKLYPNQTLLEKHRAKHEMNICFVHDQSLMSDTCLLEDNSVDHTEEVEVKIEDETRALELKCTHCNLTFIKQRSLSMHMRKHRDKNEKKEFICDTCGKTFPMKHLLKRHVVMHSEVKPHKCEKCSKTYARRDQLMSHLYSHKEHKPYVCEYCKKSFAQMCSLKDHLRTHTGETPFLCSECGKGFSNNSNLRQHMMRHTGVKPYACNLCPKSFCTKGQMRSHVTTHTGEHPYKCEECGAAFTKQNSLKKHSMIHLAVRPFACETCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFSNGDEANDPQISIKDNIEPINNEVPKQMPMLQIKPPEFNLLTFKNDKDLPPLIMKPPEVVKDLQMLSLKPPESDDSDLVRTCPESNRFVITINSCDTNGIVNGITIKLPPKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00623390;
90% Identity: -
80% Identity: -