Hrec029706.1
Basic Information
- Insect
- Hyppa rectilinea
- Gene Symbol
- -
- Assembly
- GCA_951799385.1
- Location
- OX637327.1:6270251-6275084[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.031 2.9 9.5 0.5 1 23 77 100 77 100 0.95 2 19 5.8 5.4e+02 2.3 3.0 8 23 181 196 172 196 0.82 3 19 0.0036 0.33 12.4 0.1 1 23 200 222 200 222 0.96 4 19 0.41 38 6.0 1.3 1 23 227 250 227 250 0.93 5 19 0.28 26 6.5 2.5 2 23 258 280 257 280 0.96 6 19 3.3e-05 0.0031 18.8 3.2 1 23 287 310 287 310 0.97 7 19 5e-05 0.0046 18.3 1.9 1 23 316 338 316 338 0.98 8 19 2.9e-05 0.0027 19.0 0.8 1 23 344 366 344 366 0.99 9 19 1.8e-07 1.7e-05 26.0 0.3 1 23 372 395 372 395 0.97 10 19 0.0034 0.32 12.5 4.3 1 23 462 485 462 485 0.94 11 19 0.13 12 7.6 0.2 2 23 512 534 511 534 0.96 12 19 0.0082 0.76 11.3 2.5 2 23 557 578 556 578 0.96 13 19 5.8e-05 0.0054 18.1 0.2 1 23 582 604 582 604 0.95 14 19 0.0074 0.69 11.4 0.5 1 23 609 632 609 632 0.97 15 19 0.00019 0.017 16.5 1.1 1 23 639 662 639 662 0.97 16 19 0.036 3.3 9.3 0.5 3 23 670 691 668 691 0.95 17 19 5.1e-05 0.0047 18.3 1.8 1 23 697 719 697 719 0.97 18 19 5.9e-05 0.0055 18.0 0.7 1 23 725 747 725 747 0.99 19 19 1.5e-05 0.0014 19.9 4.8 1 23 753 776 753 776 0.98
Sequence Information
- Coding Sequence
- ATGATTTTCTTTATAGATAAACAAGAAAAAGTGACTACAGCTAAGACAGTCAAAATAAAGCGGAAAGCTGAAGAATCTGTATCACATATTGAAGAGCATATAAACATAAATCCAGAGAAAACGCCTCAACCAGGACAAAAACGACAATTATTCAAGCATCTCCACAATCTGAAAATAATCCTAGAATCTACTAACGCCACGATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTATTGCGCGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTGACGGAACATCAAAATGCAGAAAAGTTCTATGGCAACATTAAAGCTAAAGGAACCTCAGTGTTTTTAGTCAAACTTGACATCACGAACTTAAAATGCATGCTTTGCAGCGGAAATATAGACTCTCTTGAAGATATATTCGTCCATCTGACTGAGAAACATAAAAAGAACTTCCACACTGATatacaaaatcaaatatttccttTCAAATTCGATACGAAGCAACTGAAATGCTGCCAATGTGCTAGTGACGTCGTTTTCGCCACATTCAGCGCATTACACGAACACATGCACAAACACTACCGACACTTCGTTTGTAGCGAGTGTGATGCCGGCTTCATCAATTATATATCGTTATCCAGACATAGTGTCACTCATATAAAAGGAACCTTCGTCTGCCGACATTGTCCTGTCGTATTTGACAATGTATTCAAGAGAAATAACCACGAAATGAGCAGCCATAAGCGACCcggcaaattaaataaatgtcatttctGCAATGAAGGTTTTAAGGATTTCATTACGAAACAGCTACATTTGTCAACAGTTCATGGCGTTGCTCCAAGGAAACATAAGTGCACCGCGTGTGACAGGACCTTTTCCTCCAATAGTTTTCTCAGCGCCCATATCAGACGCTTCCATCTGATGGAGAAAAGTCACAAATGTACAGAATGTGATAAAGCGTTCTTTAGGGATAACGACCTAAAGAACCATTTGTTAGTTCATACTGGCGCGAAAGATTTCAAATGTGAAGTCTGTTCTAAGTTTCTTGCTACGAAATCGGTTCTGACTCAGCATATGAGGATTCATAACAATGATAGGCGTTACAAGTGTACAATATGTGATAAGGCGTTTGTGCAGAAACCTAGCTTGAACTGGCATATGAGGGCAAAGCACAAAGATACTTGTTCTACTTATAGTGGCCAAGAAAAGACTGTTGTGGAAAAAGAAACTAACGCCTCCGATACGGAAAATGAAGGTGAAAAAGAACTAAAAATAACACCAAGAACCGAACTGTTAAAACATCGAAGTAACATTAAAGAAGTTCTTCTAAATTCGAACGCGACGCCTATAAGACGGTATGGAGGGATCGGATATACTTGCTGCTACTGTCTAAAGCAGTTCGAGCACCCAGCTGATCTGAAGAAACATACTCTAGAGACCCACAAAAACGTCTCAGAAGCAAATTTTATGAAGAAAATGAACATGTCGGAATATATCGTCAAGTTAGACATAACTGCATTAAAATGCAAGCTTTGCGACAATGATATGACTACTCTAAATAACTTAATAGAACATGTTCAAACTGTACATGATAAAAAAATCCACATGGATCATATAAACCATATCTTTCCTTTGAAATTCAGCAACGATTTACTGATATGCACTATTTGCTCAAGCACATTTACTAAGTTTAGAACCCTCGTTAAACACATGCACATTCATTACAGGAATTACATTTGTAACGTTTGTGATAGAGGATTCGCGAACCGAAACTCATTAACACAACATTTAGTGAATCACAAAACAGGAGCATTTGTTTGTGACTACTGTCCAAAAATCTATCCTACTTTAGTTAAAAAACGAATGCATGAAAGAACATCTCATACACACGTCGACACTACATATAAGTGTGGTTATTGCAAGAAAGCATTTAAAGATCACGGACAAAAGGAAGCCCATGTAATTACTGTACATGGTGTAACGTTGAAAACTGCATGCCAAGCTTGTGACAAGGTATTCCTCAATAGAAAGAAACTTAACATACACGTTAAAAGAGATCACTTGATGGAGAGGCCACACAAATGCAATGAATGTGACATGGCGTTTTATTCCTCAACAGGGCTGAAAAGTCATATGGTCAAGCATACAGGGTCGAAAGAATTTCAGTGCTCCGTGTGCCTGAAGAACTATGGCAGGAAGAAGGCACTGAATGTTCATATGCTGACCCATTCGGACGAGAAGAGGTTCAAATGCGAGAAGTGTGGGCTGAAATTTAAGCATAAAAGCACCTGGACACTTCATATGCGATCCAAGCATGCATaa
- Protein Sequence
- MIFFIDKQEKVTTAKTVKIKRKAEESVSHIEEHININPEKTPQPGQKRQLFKHLHNLKIILESTNATMILKHGDKGYLCCYCAEAFQEPMNLKVHTLTEHQNAEKFYGNIKAKGTSVFLVKLDITNLKCMLCSGNIDSLEDIFVHLTEKHKKNFHTDIQNQIFPFKFDTKQLKCCQCASDVVFATFSALHEHMHKHYRHFVCSECDAGFINYISLSRHSVTHIKGTFVCRHCPVVFDNVFKRNNHEMSSHKRPGKLNKCHFCNEGFKDFITKQLHLSTVHGVAPRKHKCTACDRTFSSNSFLSAHIRRFHLMEKSHKCTECDKAFFRDNDLKNHLLVHTGAKDFKCEVCSKFLATKSVLTQHMRIHNNDRRYKCTICDKAFVQKPSLNWHMRAKHKDTCSTYSGQEKTVVEKETNASDTENEGEKELKITPRTELLKHRSNIKEVLLNSNATPIRRYGGIGYTCCYCLKQFEHPADLKKHTLETHKNVSEANFMKKMNMSEYIVKLDITALKCKLCDNDMTTLNNLIEHVQTVHDKKIHMDHINHIFPLKFSNDLLICTICSSTFTKFRTLVKHMHIHYRNYICNVCDRGFANRNSLTQHLVNHKTGAFVCDYCPKIYPTLVKKRMHERTSHTHVDTTYKCGYCKKAFKDHGQKEAHVITVHGVTLKTACQACDKVFLNRKKLNIHVKRDHLMERPHKCNECDMAFYSSTGLKSHMVKHTGSKEFQCSVCLKNYGRKKALNVHMLTHSDEKRFKCEKCGLKFKHKSTWTLHMRSKHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -