Hrec014910.1
Basic Information
- Insect
- Hyppa rectilinea
- Gene Symbol
- -
- Assembly
- GCA_951799385.1
- Location
- OX637312.1:3854354-3860208[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.036 20 6.0 0.0 17 39 26 48 20 53 0.80 2 3 4.1e-11 2.2e-08 34.6 0.0 1 41 70 110 70 114 0.91 3 3 1.4e-09 7.5e-07 29.7 0.1 2 40 223 261 222 266 0.92
Sequence Information
- Coding Sequence
- ATGCAGTTGGGATCGAAGCGAGTGCCGTATGTTATGTGGACTGAAGATTTACGAGCTGGTATTGCAGAAAGGCACCTAACACAGTCAGCTACCGCTCGTCATCATGGCATTCCAAAACGAATTCTCTGCGATCATTTGAGAACGGAGAGCACGGAAAGACTACGGGGTACTAGATTTGGTATAAAGCATGCAAAACGTGCCATGTGGACAGAACAAGACTTACGTGCAGCTATGGAAGCTGTTACAAGCGGAGATATGACACGGAGAGATGCAGGAAAGCTTCATGGAATTCCAAAACGAACGCTCTACCGTCATTTGAAGACAGGAAGCGTAGTAAAACGCCTAGGACGAAAGTCAATGTTCGGCGAGGAATACGAAAAACAACTCGTGAAAAGATTATTAAATCTTGCAAAGAGAGGCGCATCTCTCACCCCGAAATTCGTTCGCAAACAAGCCTTCGATTTCTGTATAGAAAATGATATTGAACATGTTTTTAATGTGTCCACGGGCCTTGCAGGAATAGATTGGTTTTATGGGTTCTTGTCACGACATCCCGAGATTAATCCTTATTTAAAGTTTCGCAACAACATAACAGCAGTGCCCACGCGCAGAATGAGGGGTTCTATTAAATTGGTTTTGAAGAATGCAAAACGAGCTTTGTGGGCAGAAGAAGACTTACGTGCAGCTATGGCAGCTGTTAGAGAAGAAAATATATCCGAGACAGCTGCCTCACGTCGTTATGGAATTCCTAGACAAACTCTCAGAGATCATTTGCGATCCGGCAGCTTAGTAAAACGCTCGGGAAAAGAATACTAA
- Protein Sequence
- MQLGSKRVPYVMWTEDLRAGIAERHLTQSATARHHGIPKRILCDHLRTESTERLRGTRFGIKHAKRAMWTEQDLRAAMEAVTSGDMTRRDAGKLHGIPKRTLYRHLKTGSVVKRLGRKSMFGEEYEKQLVKRLLNLAKRGASLTPKFVRKQAFDFCIENDIEHVFNVSTGLAGIDWFYGFLSRHPEINPYLKFRNNITAVPTRRMRGSIKLVLKNAKRALWAEEDLRAAMAAVREENISETAASRRYGIPRQTLRDHLRSGSLVKRSGKEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -