Basic Information

Insect: Hypothenemus hampei
Gene Symbol: stc
Assembly: GCA_013372445.1
Location: JABRWK010001545.1:5499-7728[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3 1.1e+04 -3.5 1.6 15 19 52 56 51 56 0.81

2 15 0.2 1.7e+03 -0.9 0.4 4 10 85 91 84 91 0.93

3 15 5.1e-07 0.0044 17.0 12.5 3 18 99 114 98 115 0.96

4 15 1.8 1.5e+04 -3.9 1.0 6 10 141 145 141 145 0.95

5 15 1.4e-08 0.00012 21.9 10.6 1 19 151 169 151 169 0.97

6 15 8.7e-09 7.5e-05 22.6 12.0 1 18 209 226 209 227 0.97

7 15 2.4e-07 0.0021 18.0 17.0 4 19 274 289 267 289 0.89

8 15 0.88 7.6e+03 -3.0 2.0 5 10 318 323 318 323 0.93

9 15 0.00081 7 6.7 9.7 1 11 329 339 329 340 0.96

10 15 1.1 9.4e+03 -3.3 0.6 4 10 344 350 343 350 0.83

11 15 5e-10 4.3e-06 26.6 11.7 1 18 356 373 356 374 0.98

12 15 1.9 1.6e+04 -4.0 0.8 6 10 403 407 403 407 0.95

13 15 0.005 43 4.2 14.0 1 18 413 429 413 430 0.87

14 15 4.3e-09 3.7e-05 23.6 10.4 1 17 466 483 466 485 0.91

15 15 0.0012 11 6.1 16.1 1 18 495 513 495 514 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3	1.1e+04	-3.5	1.6	15	19	52	56	51	56	0.81
2	15	0.2	1.7e+03	-0.9	0.4	4	10	85	91	84	91	0.93
3	15	5.1e-07	0.0044	17.0	12.5	3	18	99	114	98	115	0.96
4	15	1.8	1.5e+04	-3.9	1.0	6	10	141	145	141	145	0.95
5	15	1.4e-08	0.00012	21.9	10.6	1	19	151	169	151	169	0.97
6	15	8.7e-09	7.5e-05	22.6	12.0	1	18	209	226	209	227	0.97
7	15	2.4e-07	0.0021	18.0	17.0	4	19	274	289	267	289	0.89
8	15	0.88	7.6e+03	-3.0	2.0	5	10	318	323	318	323	0.93
9	15	0.00081	7	6.7	9.7	1	11	329	339	329	340	0.96
10	15	1.1	9.4e+03	-3.3	0.6	4	10	344	350	343	350	0.83
11	15	5e-10	4.3e-06	26.6	11.7	1	18	356	373	356	374	0.98
12	15	1.9	1.6e+04	-4.0	0.8	6	10	403	407	403	407	0.95
13	15	0.005	43	4.2	14.0	1	18	413	429	413	430	0.87
14	15	4.3e-09	3.7e-05	23.6	10.4	1	17	466	483	466	485	0.91
15	15	0.0012	11	6.1	16.1	1	18	495	513	495	514	0.93

Sequence Information

Coding Sequence: ATGATTGATGGAAACATATTAGAATGTTTAGTTTGTTGTGAAAAAATCAAGAGAATCGACAAAGTTTGGTCTTGTTCTCAGTGCTATCatataattcatttaaaatgtattgtcGCATGGGCAAAATCATCAGAAACCCAAGGAAATTGGAGATGTCCAGCTTGCCAGAACCCTTATATGGACATTCCACAACAGTATATTTGTTATTGTGGTAAAACAGTGGATCCCAAAGCAGATCCTAATATTATCGCCCACGCTTGTGATAAAATGTGtttaagaaaaggaaaaaactgtAATCACAATTGTAGCATGTTATGTCATCCAGGTCCATGTCCAGAGTGTATCGTAATGGTTTCAAAACCATGTGGTTGTGGATCAACCCAACAAACACAAAAGTGTTGCAGTGATATTAAATTGATCTGTGAATCCATATGTAATAAACCGTTGAATTGTGGATTacataaatgtacaaaaatgtGTCATGTTGGAGAATGTTCTTCTTGTAcccaatttattattcaagaaTGTTTTTGCGGAAAAACGGGGAAAAAAGTTCTTTGTGATAAAGACTCAGTTGGCCAAACTACATTCTGTTGTGAAAATGATTGTGGAAAGCCTTTACCATGTGGTCaacattattgtaaaaataaatgtcattcaGGATTATGTGCTCCATGTGAAACagacattaatttaattaaacattgttACTGTGGAAAAACTGAATTAACCACTACGAGACTTTCTTGTCTTGATCCAATTCCAAGTTGTAATaacatttgtaataaaacCTTGATTTGTGGCCCTCCAAGTAAACCACATAcatgtaaagaaaaatgtcataaGGGCAAATGCCCTCCATGTCCTTTAACAACCATTGTAAAGTGTCGTTGTGGACACATGGATAAAGAAGTCGTTTGTCAAAACTTGACTACAAAAGCTGACGATGCTAGATGCGAGAAAAAGTGTACGAAGAAGCGACTCTGTGGAAAACACACGTGCAAACAAAAGTGTTGCATTGAAATTGAACATATATGTGCATTGCCATGCAATAAGCTTTTAACTTGTGGTTTGCACAGATGTGAATTAACTTGTCACTCTGGTCGTTGTCCACCATGCATGCACACAAGTTTTGAAGAATTATATTGTGCGTGTGGAGCTAACGTTTTGTACCCTCCTGTACCTTGTGGTACCAAACCTCCAGTTTGCAATAAGCTGTGTCGGAAACCACGTCCATGTGGCCATCCACCTAACCATGAATGTCACTCGGGAAGTTGTCCTCCTTGTTTTGTTCTAACCAAACAATGGTGTTTTGGTAGCCATGAGCAACGTGCAGCAATTCCCTGTCATCAAAAAAGCTTTAGTTGCGGTCTGCCCTGTGGAAAACCTATGCCTTGTGGTCGTCATAAATGCATCAAAGCCTGCCACGAAGGCGATTGTCCTTCGGCCTGTGTACAGCTTTGTACAGTAAGTAGATTAGTCTGTGGCCATCCATGTAATAAACCTTGCCATGATCCGCCATGCCCTGAAAGTAGTTGCAAGCAAATTGTTCCAGTAACTTGTTTATGTGGATTGCAGAAAAGTACAAAAaaaaaaatgggcAATTTATCGACAACTCAAGTAGTAGATTTGTCTGATATTACACAAGTCAAGAAACctctagttttaaaaattttggaatgcAACGATGATTGCCGGATTTTTGAAAGGAATCAAAGGCTTGCCATAGGTCTCCAAATTCAAAATCCAGATTTAAGTCAAAAACTAACTCCTAGATATTcggattatttaaaagaatggGCCAAAAAAGATCCTAAATTTTGCCAAAGAATTCACGACAAACTCACTGAATTAGTGCAACTAGCAAAacaaagtaaacaaaaaagtcgTGCCTATTCTTTCGAATCAATGAATCGTGATAAACGACATTTTATACATGAATATTGTGAGTATTTTGGAATGGAAAGTGCCGCATATGATGCTGAACCGAATAGGAATGTCATTGCTACTGCTATTAGGGATAAATCTTGGTTGCCGAGCATGAGTCTTTTGGAGGTTTTACAAAGGGAAAATGGGCATAGAAAAGTACCAGGGCCAATGTTGGGTTACAGCTCCACTCAGGAAAGTAAATCAGTTACTCTTAAACTGCCTTCGAGtgctaaaaataaagtgtga
Protein Sequence: MIDGNILECLVCCEKIKRIDKVWSCSQCYHIIHLKCIVAWAKSSETQGNWRCPACQNPYMDIPQQYICYCGKTVDPKADPNIIAHACDKMCLRKGKNCNHNCSMLCHPGPCPECIVMVSKPCGCGSTQQTQKCCSDIKLICESICNKPLNCGLHKCTKMCHVGECSSCTQFIIQECFCGKTGKKVLCDKDSVGQTTFCCENDCGKPLPCGQHYCKNKCHSGLCAPCETDINLIKHCYCGKTELTTTRLSCLDPIPSCNNICNKTLICGPPSKPHTCKEKCHKGKCPPCPLTTIVKCRCGHMDKEVVCQNLTTKADDARCEKKCTKKRLCGKHTCKQKCCIEIEHICALPCNKLLTCGLHRCELTCHSGRCPPCMHTSFEELYCACGANVLYPPVPCGTKPPVCNKLCRKPRPCGHPPNHECHSGSCPPCFVLTKQWCFGSHEQRAAIPCHQKSFSCGLPCGKPMPCGRHKCIKACHEGDCPSACVQLCTVSRLVCGHPCNKPCHDPPCPESSCKQIVPVTCLCGLQKSTKKKMGNLSTTQVVDLSDITQVKKPLVLKILECNDDCRIFERNQRLAIGLQIQNPDLSQKLTPRYSDYLKEWAKKDPKFCQRIHDKLTELVQLAKQSKQKSRAYSFESMNRDKRHFIHEYCEYFGMESAAYDAEPNRNVIATAIRDKSWLPSMSLLEVLQRENGHRKVPGPMLGYSSTQESKSVTLKLPSSAKNKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -