Hham013239.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hypothenemus hampei
Gene Symbol
-
Assembly
GCA_013372445.1
Location
JABRWK010000005.1:1621130-1625378[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9.2 7.8e+02 0.8 8.5 1 23 19 41 19 41 0.96
2 16 0.98 84 3.9 0.5 2 23 85 106 84 106 0.96
3 16 0.0018 0.15 12.5 1.1 1 23 232 254 232 254 0.98
4 16 0.58 49 4.6 1.7 1 23 368 391 368 391 0.93
5 16 0.0006 0.051 14.0 4.0 1 23 421 444 421 444 0.98
6 16 0.7 59 4.4 5.4 1 23 478 502 478 502 0.97
7 16 0.021 1.7 9.2 1.1 1 23 513 536 513 536 0.95
8 16 0.014 1.2 9.7 4.7 1 23 544 566 544 566 0.97
9 16 0.0013 0.11 12.9 0.1 1 23 569 591 569 591 0.98
10 16 0.019 1.6 9.3 1.5 1 23 600 622 600 622 0.96
11 16 0.37 32 5.2 4.9 1 19 626 644 626 648 0.92
12 16 0.00036 0.031 14.7 1.9 1 23 657 679 657 679 0.98
13 16 0.00037 0.032 14.7 0.8 1 23 688 710 688 710 0.98
14 16 0.004 0.34 11.4 1.7 2 23 720 741 719 741 0.97
15 16 0.00024 0.02 15.3 2.7 2 23 752 773 751 773 0.97
16 16 0.01 0.89 10.1 3.4 1 23 781 803 781 803 0.98

Sequence Information

Coding Sequence
ATGTCAACCAATGAAAATCCACCTGGTGAGGCTCACCAGACGCCTGTGGAGACTTTCAAGTGTTCCCAGtgcaatttttatacaaaccATGAATATTATTTGCATCAACACAATTTCACTCACGGTCTTCAGGCCCTTATGGCACATCACAAACGGAATTCTCAACAATTTGACGATCTACCCCATCAACAAGAATCTTCCGTGAAGATTCAAGAACCATTAGAACCTAATATAATGTTAGGAAAGCTGCTGCAGTGTTTGTATTGTGCATTTGAAACTGATCAGGAGGAATTTTACAAACAGCACCTTTTAACTCACTCAACACACCTTGCTCTAAACTCATATGGTTTATATAAAGTTGCTGAACAAGgatttaatgacaattttccTTCAACAGCCAATGTATCACCCCAAAATTCATCTCCAGAAAAGAGTTGTGAATTCGATAGTATTTCTATTAAGGAACAGGATATGAGTACTGCGCTGGAGAGTTTCAGGTGTTCGATTGACTGTTGTACTTAtgaaacagaaaatgaaaatgcatTCAGAAAACATAGTTTGAGTCATGAAATTGTATTGGTTCCTGAGCCATTAAaGCctttaaaatgtgattttgAAAGCAATCAAGAgaagaaacttgaaaatatttcggaatctattttaattgtaaataatataccTCAAAGAGAAGTATTCAGATGTAATAACTGTGAATATGAAACCAATCTTAAAGCCTTTCTTAAGAGACATATGCTGATCCACTCAATAAAGCAAGAGATTCAAGATGAAACTCTGGAAACGTACCATTGTAAccaatgcaattttgaaacacACCATGACAAATATCTTAGAAGACATGAATTGAGCCATCAACAGCTCAGACCACTTAAATGTgttaaatgcagttttgaaactCTGTACAAACGAATGTATTTACTCCATATGAAGGCCCATAAGTCAAAGAGTCACGAGAAAAAGACTGCAAAACGGAAAATCAACTATATTAAGTGTGATGAGTGTTCTTTTCAAGCGCCATCCATGGAATTAATAGATGTCCATAAGAAAATTAAGCATTCTACTCATAGTATAGATTCAAATTTGTTCAATTGTCCTTATTGTAAATACCAGACCAACTGGGAACCTTGTTTGAAGAGGCACATAGACAGGGAACATCCAAATAAGCAGCCATCAGTTAGtgttaaaaaggaaattgaaGTCAAAGTGGAAGAAGAACCTGAAGTGCAACGCTACGAGAATCTTTTTCGTTGTCACGACTGTGACTTTTCAAGTAAAAGCAAGCAGTAccttattttgcatttaaaacgATCCCATTTGAAAACGGAAACACCAGACAGGTCtaaatcaaaattagaaaaaagggGACGgtttgaaaaatcgaaaaccAAAGGAGATAAGGGGTCTGGAAAGTTATTTGAGTGCAAGTTTCGCAATTGTACATTCCAAACATCGattaaaagcaattatttaCATCACTTGAGAAAGCATCAGAGCCAGAATCCTCAAAGGAtcatgtttcatttttgtgaTTTGTGCGATTTTATTGCTAAAACTGAGGACAATTTGGCAGAACACAAAAGAAGAACGCATTTAAGCCATCTAAGaCTAATGTACAAATGCACTCTGTGTGACTTCAAGACGGCTTTCAAACACAATTTAAAATCTCATTCAATCAAACACAAGAAATATACCTGTGACGTTTGCGATGAAGAATTGGATTCCGCCTATGCCCTAGTCAAACACCGAAAAGGCCATCAAATTAACCACAGAAACAGGATATATTTGTGCGATGTGTGTGGTTTTCAAAGCAAAAATGACAGGTCTTTGAAGATGCATAAGAAAACTCACAATCCAGAATTCAAATGTCCTGATTGTCCTTTCCAGACTCATAGCAagGTGAATTTCCAAAACCATTGTATCAACCATAAAAGCGCAGACGAAGTGACAATGTTCCCATGTCCACATTGTTCCTATCAGTCGAGATTGAAACGAAACTTGGCTTGGCACATGAAACGTCACGCAGATCCGTCGAAGGCccaaatattcaaatgtcCCACGTGCGAGTACCAAACGTTTACCAATGCCCAACTCAAGTCCCATCTCATGGTCCATAAAACGAAGGAAGAGGTGGTGATGCTAAAATGCGATTTTTGTCCATTCGAAACGAAACGTAAATCGAATATGGTTCAGCATAGGCTGAGACATCTAAAAGATTCACCGGACGTACCATTATTGTCCTGTCCTGATTGTAACTACACCACTGTGGCGAAAAGACATTTGAATAAACATCGGAAAACGCACAACGTGAATCCGgacaaaatgtttcaatgcACCTTTTGCCCTTATAAAATTCATAGGAAAATTTATCTGATGCGTCACATGGAAAATCACAAAACGGTGGAGACTTTTGGAAATGATCAATGGCAAAGGTACACTTTTCCACCGCAACCCCCAATGACTATTACTGGGGTAACGGTGGTTCCGAATTTAGGACAAAATATTCAGAATCACAATTTAATGTAA
Protein Sequence
MSTNENPPGEAHQTPVETFKCSQCNFYTNHEYYLHQHNFTHGLQALMAHHKRNSQQFDDLPHQQESSVKIQEPLEPNIMLGKLLQCLYCAFETDQEEFYKQHLLTHSTHLALNSYGLYKVAEQGFNDNFPSTANVSPQNSSPEKSCEFDSISIKEQDMSTALESFRCSIDCCTYETENENAFRKHSLSHEIVLVPEPLKPLKCDFESNQEKKLENISESILIVNNIPQREVFRCNNCEYETNLKAFLKRHMLIHSIKQEIQDETLETYHCNQCNFETHHDKYLRRHELSHQQLRPLKCVKCSFETLYKRMYLLHMKAHKSKSHEKKTAKRKINYIKCDECSFQAPSMELIDVHKKIKHSTHSIDSNLFNCPYCKYQTNWEPCLKRHIDREHPNKQPSVSVKKEIEVKVEEEPEVQRYENLFRCHDCDFSSKSKQYLILHLKRSHLKTETPDRSKSKLEKRGRFEKSKTKGDKGSGKLFECKFRNCTFQTSIKSNYLHHLRKHQSQNPQRIMFHFCDLCDFIAKTEDNLAEHKRRTHLSHLRLMYKCTLCDFKTAFKHNLKSHSIKHKKYTCDVCDEELDSAYALVKHRKGHQINHRNRIYLCDVCGFQSKNDRSLKMHKKTHNPEFKCPDCPFQTHSKVNFQNHCINHKSADEVTMFPCPHCSYQSRLKRNLAWHMKRHADPSKAQIFKCPTCEYQTFTNAQLKSHLMVHKTKEEVVMLKCDFCPFETKRKSNMVQHRLRHLKDSPDVPLLSCPDCNYTTVAKRHLNKHRKTHNVNPDKMFQCTFCPYKIHRKIYLMRHMENHKTVETFGNDQWQRYTFPPQPPMTITGVTVVPNLGQNIQNHNLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-