Hham008962.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- prdm10
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000034.1:530715-534895[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.005 0.43 11.1 0.2 3 23 439 459 438 459 0.96 2 12 0.01 0.88 10.1 1.6 2 23 535 556 531 556 0.88 3 12 0.00018 0.015 15.7 1.4 1 23 567 589 567 589 0.97 4 12 0.023 2 9.0 3.0 2 21 602 621 601 623 0.94 5 12 0.8 68 4.2 0.3 2 12 632 642 631 653 0.73 6 12 0.013 1.1 9.8 0.7 1 20 660 679 660 682 0.91 7 12 4.4e-05 0.0037 17.6 5.4 1 23 688 710 688 710 0.98 8 12 6.6e-06 0.00056 20.2 9.4 1 23 715 737 715 737 0.97 9 12 6e-06 0.00051 20.3 0.8 1 23 743 766 743 766 0.95 10 12 0.0018 0.16 12.5 1.7 1 23 795 818 795 818 0.97 11 12 0.0024 0.21 12.1 2.6 1 23 840 863 840 863 0.97 12 12 0.00025 0.021 15.2 3.0 3 23 900 921 899 921 0.97
Sequence Information
- Coding Sequence
- ATGGATAAAAGCATTGAAAGTCAAGGGCAAAGTGAACAAATTGAAGAAGTGAAAGGGACTTCAAATATTGCAACCAATTCAGCCCGAAATAATCAAACGCTTTTCTACATAGCCGTTGaatatatcaaaaatgataaacaagAAACTAATAATGTCACCCCAATAAATCCTACAGTCTCTGAAAAATATATCCCAGAATTTGTTACCCCACACGGAAACCCATTGGACCCTGATATGAATTCAGTGGCACCCTATAATTCAGTTTCCATCCATTATCCGGAAAACAGTAACAATACTGTGGCACCCATAATTATTCATCAATATTTCACGCAAGAACAAGAATCTCTTGTCAACCATCTTACCATTGAAAACcctttggaaaatttatcttCCGAGATACCATCAGTTTTACGCAGCCAGGACTTACCAACAGATAATCAGTCATACTTGCAACTAATTCAAAATGATAACGTTGTACCCGAAGGTGAAAATATGCAACTGATTTCGGAAAATGATCAACAGGATGTTGAATTGTTGATTACCGATCATGCAACTGGAGTATCTTATAGTCTTAATACCCAAGAACTTCTTGTGGGACGTTGTCTATCAAATGAGCAACCCTTTCTTGACACAATCAACTCAAATTCTTTGCTTGGCACTGATTTTTTCACTTTGGACGATGTCAGCTTAAAATCCCAATTAAGTGCTGAATCAGGTAGTTCTGAAATGGTTATGTCAGTTAATAATGAAACAGTTGAAGGATTCATGTCTAAAATTCCTGATCAACCAACTGAAGTGCAAATGGTTACAAGAAGTAATTCTCTTGTTAATGTAGAAGATGAAGAGGGATTATtatCTTGTGTGTACAGCATCACAGATAAACCGATATTATCCAGAGCTCGTGCTTCATTGCCAGAATCTTATTTGTTGCTTACAAAAATTAACGATGAAGATGCAGTATTTGCTAAGAAAAGGATTCCCAAGAGAACCCAATTTGGCCCACTAAAAGGGATTTTAGATGTGTATAAGGAAGGCAATATCAAAGCAAACAGCAGTTTCTTCATTCTTCTAGAAGGAATCActtataatattaatgtttccGATGAGAcaaattcTAACTGGATGGGATTTGTAAGAAAAGCCAAAAATTACGAAGaacaaaatctaataataactCAAGAAgataaagatttatattttacatcgATAAGAAACATTCTGCCAAAAGAAGAGCTTAAAgtcGGTTACAGTACGAATTACGCCCGCCAATTCAATTTAGAAACATTATGTCCCCCAGAAAAGAAATCGTGGCTCTGTTATGAATGTTCGGAAAGATTTGCCTCCTCAGAAGAACTGCGCGAACATTTTAGCGTCCATGATGGATTGGAATCTATTGAAAATACGAAACCCAAACGCAAATATAAAAAGACTTATGCATCACAGACAAAAAAATCGCTTGTAGAAGTTGTGGAATGTAATCACTGTTATGATCTTTTCGCATCAAGTTCCAGTtacacttttttgaaaaatcatttggcggaaaaacataaaattgatGGAGTTAATAAGATTGGAGAGCAGTTTTCCACTTTTCGATGTTCTCAATGTGTTGTTTGCAATATGCGATTTAAAATGGacagtttattaaatattcatcaaTTAGAACACGATTCTGAATTATATCTGGATCAGGCAAATCATGTGTGTCCACAGTGCCAAAGAAAGTTTCCTACAAGGAAGCAGTTGGTTTTGCACGTGTCTTCGCACAAATTGCCACAGATAAATCAGAAAAGTGATTGTGTTAAGTGTCCAGTTTGTCACAAATTATTTGCGTTTTCAATAAGATTACAGAAACATATGTTATGTCACGGTTCCGATGAAAATAAACCTTTGCAGTGCAAAGTGTgtcaaaaacgatttttaacaGGATCAGCCCTGGCTTTCCATTCAAAAATCCATCAAACAGACGAGAAACAATTTGAATGTCCCATTTGCAAAGAACGTTTTGATCATGTGCTGAAATTAAGACTGCACATACCTAAACACGCccataataatacatatacttGTCCACACTGTAAGAAAGTTTTCAGCAAATACAGTTTTGTCAGAAAACACATTCGATTTCACAGCGAGAGAAAGCATCATTGTTCGCACTGCACTAAATCGTTTTCTACTAGTGATAATTTGAAGAAGCACATGCTTAAGCATTCCGATCACAGAGAGTTTTTGTGTGCTGACTGTGGCAAACAATTCAAGAGAAAGGACAAGTTGGTCGatcatattaaaaagttgcatCTTCAGATTTCAAATGGACGAGTGGCAAAATCAAGAACTCGATCAGTAACTACAAAAGAACCCATGGACTTTCATaggtttatttataaatgtcaCACTTGCCTTGTTGGTTTTAAACGGCGCGGAATGTTGGTTAACCATTTAGCTAAGCGTCACCCGGATGTTAGACCTGATTCGGTTCCCGAACTGAATTTACCAATATTACAAACAACTCGAGATTATTATTGTCAATATTGCGTAAAAGTCTATAAAAGCAGTTCGAAAAGGAAGCTGCACATATTGAAAAACCATCCAGGAGCTGCATTACCTAAAGATAATGGCCAAAAAATTGATGCCCAACCGACAAACGCTTCAAcgacattttcaataacagGAAATGTTACAACCAGACCAAAGAATTGTAAATGGTGTCACAGGCAATATGCAAGAAAAAGCAAGTTGTTGCAACACATTCGAAAAGCTCATCCCAACAAGTTGTTGGAAGAAGATCCAAACCTTAAAGAAAattgTCAAAATGAATCAATGccaattttaaaagagaatGTTTCTGAAACTGTGACGAATAGTTGTAAGGACAAACACACAACTTGTACAACCAATCAGCCGCACGAGTTTAAtaacgtttttgaaaaaaatcagattACAACAGATGGAAATATAACAGAAATAACACCGGTGGTAATTGAGGGTTTAATTGATGAAGATACTAAATATTGCCATCTATCCATAGTAGAGAATAATATAATGGAAACCGCAGAATTAGACAATGAAAATGAGCCACTGTATCATTTGTTGTCGACAAATAATGGTAATAATTGcacatttgaataa
- Protein Sequence
- MDKSIESQGQSEQIEEVKGTSNIATNSARNNQTLFYIAVEYIKNDKQETNNVTPINPTVSEKYIPEFVTPHGNPLDPDMNSVAPYNSVSIHYPENSNNTVAPIIIHQYFTQEQESLVNHLTIENPLENLSSEIPSVLRSQDLPTDNQSYLQLIQNDNVVPEGENMQLISENDQQDVELLITDHATGVSYSLNTQELLVGRCLSNEQPFLDTINSNSLLGTDFFTLDDVSLKSQLSAESGSSEMVMSVNNETVEGFMSKIPDQPTEVQMVTRSNSLVNVEDEEGLLSCVYSITDKPILSRARASLPESYLLLTKINDEDAVFAKKRIPKRTQFGPLKGILDVYKEGNIKANSSFFILLEGITYNINVSDETNSNWMGFVRKAKNYEEQNLIITQEDKDLYFTSIRNILPKEELKVGYSTNYARQFNLETLCPPEKKSWLCYECSERFASSEELREHFSVHDGLESIENTKPKRKYKKTYASQTKKSLVEVVECNHCYDLFASSSSYTFLKNHLAEKHKIDGVNKIGEQFSTFRCSQCVVCNMRFKMDSLLNIHQLEHDSELYLDQANHVCPQCQRKFPTRKQLVLHVSSHKLPQINQKSDCVKCPVCHKLFAFSIRLQKHMLCHGSDENKPLQCKVCQKRFLTGSALAFHSKIHQTDEKQFECPICKERFDHVLKLRLHIPKHAHNNTYTCPHCKKVFSKYSFVRKHIRFHSERKHHCSHCTKSFSTSDNLKKHMLKHSDHREFLCADCGKQFKRKDKLVDHIKKLHLQISNGRVAKSRTRSVTTKEPMDFHRFIYKCHTCLVGFKRRGMLVNHLAKRHPDVRPDSVPELNLPILQTTRDYYCQYCVKVYKSSSKRKLHILKNHPGAALPKDNGQKIDAQPTNASTTFSITGNVTTRPKNCKWCHRQYARKSKLLQHIRKAHPNKLLEEDPNLKENCQNESMPILKENVSETVTNSCKDKHTTCTTNQPHEFNNVFEKNQITTDGNITEITPVVIEGLIDEDTKYCHLSIVENNIMETAELDNENEPLYHLLSTNNGNNCTFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -