Hham006519.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000670.1:17733-22043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.014 1.1 9.8 1.4 2 21 201 220 201 221 0.93 2 9 0.00092 0.078 13.4 1.0 1 23 233 255 233 255 0.98 3 9 0.11 9.1 6.9 1.6 1 11 261 271 261 283 0.79 4 9 1.1e-05 0.00092 19.5 0.1 2 23 306 327 305 327 0.97 5 9 3.1e-05 0.0026 18.1 0.5 1 23 349 371 349 371 0.96 6 9 0.00033 0.028 14.8 2.9 1 23 377 399 377 399 0.96 7 9 1.5e-05 0.0013 19.0 3.3 1 23 407 429 407 429 0.99 8 9 3.3e-05 0.0028 18.0 5.9 1 23 435 457 435 457 0.98 9 9 2.8e-05 0.0024 18.2 2.4 1 23 463 487 463 487 0.92
Sequence Information
- Coding Sequence
- ATGGAAGGTGATCTAAAAATTAAGTCTCGTGATTTTCCTCATATTTGCAGGGTTTGTCTGATTACTGGCGACTTGAAACCGTTAATCGACAGTAgactttttgatattttcaaagcAATTAGTGAAATTgatATAAATTCCAGTGATATTCTACCGAAAAACATCTGCATAACTTGTTCAAATTATCTTCAAGAAATCAGAAGGTTTGCTGATAAATGTAGAGCAAACAATGCACTCTTAAAGTTAGTCTTAGAAACGGAAGAAAAAGGAGTCAAACAACCCATGTTAGATAATAATACACAACATTTAGAATGTGACTTGGAATTGGAGGAGAACTCCCAAGACAATAACAGTGTTGATTATGACAATACTAGTAACTACGAAGATAGCCCtgactttttatatttaaaaaatgaagatgaaaATGACAGTGAAGAAGACGATGTTTGtctgaaaaaaagaattcgaagaagaaaaaaaatgatagaatctaaaaaatctgggaaaattaatttaagaaaaaagcgACGAGCTGTGAAGCAATCAGAGGAAAGCGATGAGGTTGATGAAGATGATGACATCTCAAATAGTGCTATTCCTGTTTGTAAAGCCTGCGGTGGAACGTTTACGAGTAAAACTAAATTGTGTTCACATTACAAGGAAAATATCAGTTGCAGacctaaaagttttaagttgTATAAATGTGATCTCTGCGAAAAAGaattttcaacaataaggAGACGTAATGAACATATGAACATTCACACAGGAGAAACACCATATATTTGTAACTATTGTGGTAAAGGTTTTCAATTATATCCTGCTCATTTCAAACATGTCTATAGACATCGATTGGCATTAGGTGAAGTTGAGCTGAAACCCGGTTATATGGAAAATAGAGTAAGgctcaatttaaaatgtgaacTTTGTCCTAAAGTATTTGCTAGTAGATCTGGTTTTGCAAATCATCAGCTCATTCATCAAGGAGTAAAAATCCAGTACAAAAAACGACCTAAGAAAGAGGATgcaccaaaattaaaaaattatttatgcaaTTATTGTGCGAAAAGTTTCCGTACTAAAGTTCAATTAGATGGACACATTAGAGGTCATACAGgaGAACGTCCGTTTGCCTGTTCCTTCTGCcacaaattattcaaaacgAAGGCCGCATTGAAAACTCACGAAATGAATCATTTGGGAACCACGCCACAACGATTTAAATGCGAGACGTGCAACAaaccattttctttaaaagccCATTACGAGGTGCATAAAAGGACGCACACCGGGGAGAAACCATTTTCATGTCATTTTTGTGGAAAATGTTTCAACTATAGGGGAACGTGGAGGatacatTTAAGAATGCATACGGGTGAAACGCCATATTCTTGCCCTGTATGTGGTAATCGATATCACGATAAAAGCAGTTTGAATAaacatcaaaagaaaaaaggacaTTTAGGAGAGGCTGTTAAACAGGAAAGGTTGCTTCTATAG
- Protein Sequence
- MEGDLKIKSRDFPHICRVCLITGDLKPLIDSRLFDIFKAISEIDINSSDILPKNICITCSNYLQEIRRFADKCRANNALLKLVLETEEKGVKQPMLDNNTQHLECDLELEENSQDNNSVDYDNTSNYEDSPDFLYLKNEDENDSEEDDVCLKKRIRRRKKMIESKKSGKINLRKKRRAVKQSEESDEVDEDDDISNSAIPVCKACGGTFTSKTKLCSHYKENISCRPKSFKLYKCDLCEKEFSTIRRRNEHMNIHTGETPYICNYCGKGFQLYPAHFKHVYRHRLALGEVELKPGYMENRVRLNLKCELCPKVFASRSGFANHQLIHQGVKIQYKKRPKKEDAPKLKNYLCNYCAKSFRTKVQLDGHIRGHTGERPFACSFCHKLFKTKAALKTHEMNHLGTTPQRFKCETCNKPFSLKAHYEVHKRTHTGEKPFSCHFCGKCFNYRGTWRIHLRMHTGETPYSCPVCGNRYHDKSSLNKHQKKKGHLGEAVKQERLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -