Hham010539.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- Sall1
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000012.1:1557052-1560567[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.2 3.6e+02 1.9 0.1 2 23 8 29 7 29 0.90 2 14 0.0014 0.12 12.8 2.0 3 23 623 644 622 644 0.93 3 14 0.0017 0.14 12.6 1.3 2 23 653 674 652 674 0.97 4 14 0.0014 0.12 12.8 0.8 2 23 677 698 676 698 0.96 5 14 0.15 13 6.4 2.6 1 21 704 724 704 726 0.91 6 14 3e-05 0.0026 18.1 5.0 2 23 733 754 732 755 0.95 7 14 0.13 11 6.7 1.3 6 23 769 786 767 786 0.95 8 14 0.00012 0.011 16.2 1.7 3 23 793 814 792 814 0.97 9 14 0.55 46 4.7 0.1 2 23 831 851 830 851 0.95 10 14 5.3e-05 0.0045 17.3 1.6 1 20 857 876 857 879 0.92 11 14 0.00076 0.064 13.7 0.3 1 23 887 909 887 909 0.99 12 14 0.00061 0.052 14.0 3.7 1 23 915 937 915 937 0.98 13 14 3.5e-07 3e-05 24.2 3.5 1 23 943 965 943 965 0.98 14 14 0.00096 0.081 13.4 7.0 1 23 971 993 971 994 0.96
Sequence Information
- Coding Sequence
- ATGCAACAAGCATCTGAGACTATGTGCCCTGTGTGCACTTTGTACCTAAGGCCAGGTATAACGTTAAAACAACATTTGGCCAGTCATCCGAAACAAAAAGTCATTGATGCATTAGTAAAGTTGTCTATATTGGATGACGTGCCCAAAGGGCAACAAAGTGACAATGTTAATGTTCCAGAAGTACCAGGAACAATTCAAACTCAAAATATGGGGCCGTACATTAACCAGGTAGCCTTAAGTCATCAGCCGAATATACCAGGCAACCATTTCTTTATGTATCAACAAAGTATGAGCACCTCTTCCCCTCATCAAACTAACGTGTCACCATTACCATTTAATCCATTTGCGCAACAATACTTAGTGCCGACCATCTACAATCCTCAAATGATGCCTTATTTCTATCAGCAACAGCAATTGATTATGTCAAGTAATGGGATGCCACCCCCAGTACGGGCATTGCCCTTTGATATGTCCGTTAACAATTCAGGACAAGGTCCTTCAACTGAAACAAGACCATCGGACCTTTCAGTTAAATCTAAGGACAAAGACGGTGAAGAgaatatagaaaaaagtaaaactgaAGATAAAGAGGGCTCCGAAAGAACTAATGATATGCAAATGGAGGAGGAAGAGagtttaaaaatcgatttgaaaGAGCAAGACTTAATGAGTGATCAcaatgaagaagaagaggaatgTTCAAGAGAAGAGTCGTCATCTTTATACAAAAATGATCAGGATAGTGATGAGAGAGTTGAAAGCGCCTTTTCtcataatgaaaattcttctGACCATGATTATGAGGCACATATGCAGGAAATTGAATCACAGTATTTAGCTAATAATTTGATTGATCATGAAGAGTGCATTGGGAGACCCGCCTCTCAACGTTCTTCCAATTCTGAGTGGGCTTTTAGACCGGACTTGAATAAGGCCTGCCAAActcaaaatagtttaaatatttctccTAGATCAGTGTCTCATAATGAAGAGTCTTCAATGTTATCAGAATCAagaagcaattatttttttgttgatcaTAAAAGTAATGTTTCCAGCACGTTTTCTTCTGAAGAACAACATTCTTACGAACAGgCTGAACCGATTTACACTTCTgctaacataataaataacactGAAGGTCTAGAATTCATGAGTATGGAGGAAATTGAAGGCATGCAAGTGATCATTGGagatttttccaattcttCTTTGATTCCAGCCCCGGAAAACTATGACTCTGTCCGACCAGAAAATCCTCCTATTCTAATGACAATCAGTGGCGTTTCAGTCATGTCTCCGAATCCAAATAATGGCAATATGGAGCTATTAGAACAcagcattttaggaaatagtATTGAAGATAATTCCATTGGTAATGTGAATATTCGGTCTGATGAAAAGATGCCTCCAAGAGGTGAATTGTCAGgtCAAGAAAGTATGGGTAGTACAAGTGATGTTGCTTGGAATCATATTCAACAATATCAAGAACAAAATAGCGTTAGCATGGGTTCTTATGAACATAATCCTTGGGACAATAGCCAGGAGCGGAATAGTTATATTGAGGAAAGCGATTCAAAATtaaatatgaGCACTGTAGATATGACAGCTTTGAAAGAGGAACTGGCAGAAGGAGTGGCAGGCTGTAAATCGAATTCTAAATACGTAGGTCTTGATATTAACaggaaaaaagtgaaaaagttgATTATTAAACCGAAAAAGCCCATAAAAGAGACACAAACGAAGTTTGATCATGTTTTTACTAATGGGCTTAAAGTTGAGAATACAGAGGAAGATGTAGATAATTTGGGATTAGATAATAaagaagatattaaagaagAGACTAAACTGTCCGTCATAAATATATGTAGGAGTTgtgacaaaatatttaagacaaaaaaagaactacGTATGCACAATAGAGAATTCCATAGACAGACCAAATTGAAAGTCACTAAATGTCAGATATGTGATGAAGTATTCGATATGGAGCACAAATTTAACgaacacttgaaaattcatccaTTGGAGTGTCGAATGTGcggaaaattgttttacaggagACAGGGACTGAAACTGCATACTGCCAGACATTTGGGTATAAAACCGTTTAAGTGTGATTTGTGCGACAAGGCTTTTTTGGTAAAACAGAAACTAGAAGAGCATCGGAATTGCCATACAGGAAATTCTCCGATTAAATGTTCCATGTGTCCGGAAACGTTCAAGAGGCATTCAAATTTGGTCCAACATAGAAACAAACATCATTTTATGattaaaaggaaaatcaaaGATTACATATGCTTTTGCGGTGAGGTATTTCACTCCAAGAAAAAATTGGCGTGGCACAAGGAAATCCATGATTCAAAGCCGAAAGCCTGCACTCAATGcagtgaaaaatttattcatatggCCAGCTTAACAAGACACATGCGAAGGGCTCACAATGCGGAATATTTGCCTGACGATCGGAATCCGACACAATCGAACACGGAATGTCCAATTTGCAAAGGAATCTACCTCAAAACGTCCCTAGACGCTCATTTAAAAACCCATACTAGCCAAAAGCCGTTTAATTGTTCGATATGCAACAAGGAATTCACCACCAAATGGAACTTGAAACTCCACAAATGGACGCATGCTTCGCGGACACAAAAACCTTTCAAATGCGAACTGTGCAAGGGAGCTTTTATACGCGAAAACGACTATATATCACACATGAACTCTCATAAAAGTCTACGTCCCTACACGTGCAATTATTGTGGAGCTCAATTCATAAGGAAATATAATTGTCAGCGACACGTGAAAGAACATGAAAACGATAAAACCTACAATTGTACCGTGTGCGGCAAATCGTTTCATCGATCGTACTACTTGAAAGACCATATGCGAGTTCATAGTGGGGATCGGCCCTATTCCTGTCACATTTGTGGCAAAACATCAACTACGAAATCGAATCATAATAAACACGTGCAAATTCATCATGCCAGAGAACCGGTAAGCACTGAAAATTAA
- Protein Sequence
- MQQASETMCPVCTLYLRPGITLKQHLASHPKQKVIDALVKLSILDDVPKGQQSDNVNVPEVPGTIQTQNMGPYINQVALSHQPNIPGNHFFMYQQSMSTSSPHQTNVSPLPFNPFAQQYLVPTIYNPQMMPYFYQQQQLIMSSNGMPPPVRALPFDMSVNNSGQGPSTETRPSDLSVKSKDKDGEENIEKSKTEDKEGSERTNDMQMEEEESLKIDLKEQDLMSDHNEEEEECSREESSSLYKNDQDSDERVESAFSHNENSSDHDYEAHMQEIESQYLANNLIDHEECIGRPASQRSSNSEWAFRPDLNKACQTQNSLNISPRSVSHNEESSMLSESRSNYFFVDHKSNVSSTFSSEEQHSYEQAEPIYTSANIINNTEGLEFMSMEEIEGMQVIIGDFSNSSLIPAPENYDSVRPENPPILMTISGVSVMSPNPNNGNMELLEHSILGNSIEDNSIGNVNIRSDEKMPPRGELSGQESMGSTSDVAWNHIQQYQEQNSVSMGSYEHNPWDNSQERNSYIEESDSKLNMSTVDMTALKEELAEGVAGCKSNSKYVGLDINRKKVKKLIIKPKKPIKETQTKFDHVFTNGLKVENTEEDVDNLGLDNKEDIKEETKLSVINICRSCDKIFKTKKELRMHNREFHRQTKLKVTKCQICDEVFDMEHKFNEHLKIHPLECRMCGKLFYRRQGLKLHTARHLGIKPFKCDLCDKAFLVKQKLEEHRNCHTGNSPIKCSMCPETFKRHSNLVQHRNKHHFMIKRKIKDYICFCGEVFHSKKKLAWHKEIHDSKPKACTQCSEKFIHMASLTRHMRRAHNAEYLPDDRNPTQSNTECPICKGIYLKTSLDAHLKTHTSQKPFNCSICNKEFTTKWNLKLHKWTHASRTQKPFKCELCKGAFIRENDYISHMNSHKSLRPYTCNYCGAQFIRKYNCQRHVKEHENDKTYNCTVCGKSFHRSYYLKDHMRVHSGDRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -