Hham007796.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000129.1:98024-103525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.21 18 6.0 2.2 3 23 167 191 165 191 0.76 2 10 0.036 3.1 8.4 6.2 1 23 197 219 197 219 0.99 3 10 4e-06 0.00034 20.9 1.4 2 23 226 247 226 247 0.97 4 10 1.2e-06 0.0001 22.5 2.0 1 23 253 275 253 275 0.99 5 10 2.8e-05 0.0023 18.2 1.4 3 23 283 303 282 303 0.97 6 10 0.0001 0.0088 16.4 0.2 1 23 309 331 309 331 0.98 7 10 3.9e-07 3.3e-05 24.0 2.4 1 23 337 359 337 359 0.99 8 10 2.7e-05 0.0023 18.3 3.2 1 23 365 387 365 387 0.98 9 10 2.1e-05 0.0018 18.6 1.7 1 23 393 415 393 415 0.98 10 10 1.5e-05 0.0013 19.0 7.8 1 23 421 443 421 444 0.96
Sequence Information
- Coding Sequence
- ATGActgaattggaaaaattaggcgatttaaataaaatttgcaggATTTGTCTCAAGGAGGATAATATATTgctaaatttatttgattctaaatttttccatattattaCTTCAGTCACCTCTCTTGtgttaaaacagGGAGATTTCTGGCCAGAAAACATTTGCCAAAGTTGTAGAAACAAGTTTAGTGAGTTTTACAAATTCAAACAGTTTTgtgagaaaaataatgaactttTGAAGTCACTTATATCAGTCAAACTTGCAAATCAAAATAAGAAGGAATATGTAGTTCAAGGGGAGACAGGCGAGAATGAGATTGAATATGTAGAGGAAGAAGTAGCAGAAACCATTTGCCAGTCAAATGATTCAAGTCCTTACTATAATAACGGCCCTTTAACAGACAATAAAGTTTGGTGTAAAGATTGCCATTCCCACATTGAATCATCCAATATAGAAATTCACAAGGAAGAATATCATCCAAAGAATGACTCTCATTTTTGTTACATCTGTTCCAAAGATAATAGCTCAACTTACAAAACTGCGAAACAACTTCGAGCTCATATAAAATACCACAGACAAATACCTAAATTTCAATGTGAATTTTGCCACAAATGGTTCAGATTGAAACACCAGAAAATGGTACATATGCGTATACACACAGGAGAACGGCCAGCAACTTGTAACTTATGTGATAAATCGTTCAGGGATCCTAAATATTTACGAGTTCACTCAAAGTCACATACTGgagaaaaaccatataaatgttcaatatgTGAAAAACGATTTGCTTTTCAATTCACATTAAACGTCCATATGAAAAGTCATAGTGCTAAGAGGGAAAACATGTGCAGTGTATGTgggaaaacttttatttaccTTCACACTTTAAGAATACATAGCAGGGTGCATACAGGCGAGCGACCTTATAGGTgcaaattatgtttttcatcGTTTATTTCCGCTTCAGTTTTGAATGCACATATGTTAATACATTCAGAccaaaaaagATTTCAATGTCAACTGTGTAGTAAGAAATTTAAACGAACTGGAGATTTGAAGGTTCACATGCGAAGTCATACAGGAGAAAAGCCGTATGCGTGCACTTTATGTAGTAAGAAGTATAAAATGTCTTGGCATTTAACTGAACATATGAAGACTCACACtggtgaaaaaaattttatatgtgaaAACTGTAGTAAATCATTCTACAATATGCAGTCCTTACAAATTCATAGGAGATCGCATTCAGATGAGAAAACTTACAAATGTACTGAATGTAATAAAAGTTTTGTGCATCGTACTTCATTAAGTTCACACAAAAGGAAGCATCACACgtgcaaataa
- Protein Sequence
- MTELEKLGDLNKICRICLKEDNILLNLFDSKFFHIITSVTSLVLKQGDFWPENICQSCRNKFSEFYKFKQFCEKNNELLKSLISVKLANQNKKEYVVQGETGENEIEYVEEEVAETICQSNDSSPYYNNGPLTDNKVWCKDCHSHIESSNIEIHKEEYHPKNDSHFCYICSKDNSSTYKTAKQLRAHIKYHRQIPKFQCEFCHKWFRLKHQKMVHMRIHTGERPATCNLCDKSFRDPKYLRVHSKSHTGEKPYKCSICEKRFAFQFTLNVHMKSHSAKRENMCSVCGKTFIYLHTLRIHSRVHTGERPYRCKLCFSSFISASVLNAHMLIHSDQKRFQCQLCSKKFKRTGDLKVHMRSHTGEKPYACTLCSKKYKMSWHLTEHMKTHTGEKNFICENCSKSFYNMQSLQIHRRSHSDEKTYKCTECNKSFVHRTSLSSHKRKHHTCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -