Hham002248.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- salm
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000132.1:159517-167928[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.3 2e+02 2.7 0.2 3 19 2 18 1 20 0.91 2 10 3.5e-06 0.0003 21.1 0.9 1 23 317 339 317 339 0.98 3 10 4.7e-06 0.0004 20.6 1.9 1 23 345 367 345 367 0.98 4 10 0.043 3.7 8.2 3.8 2 23 659 680 658 680 0.98 5 10 3e-08 2.5e-06 27.5 0.6 1 23 686 708 686 708 0.97 6 10 4.8e-05 0.0041 17.5 3.5 1 23 718 740 718 740 0.98 7 10 0.0063 0.54 10.8 2.4 2 23 995 1016 994 1016 0.97 8 10 0.053 4.5 7.9 1.4 1 14 1022 1035 1022 1036 0.92 9 10 9.6e-07 8.2e-05 22.8 4.0 3 23 1187 1207 1185 1207 0.96 10 10 1.4e-07 1.2e-05 25.5 0.9 1 23 1213 1235 1213 1235 0.98
Sequence Information
- Coding Sequence
- ATGTGTCAACGATGTCAAGAACAATTTACGGACGTCCAAGATTATCTGACACATAAGGCggaatgtgaaaaaaaagcGATCAAACATGACGATCCGGCGCATTCCGATCCCGAGGACATGGTTGTATCTGAGGAGGATGACGAAGACGACGTGGAATCAGGTGGAAAACGACTGGAGCGTATGCGTCGTCATCGTCAAGACGCCGCAAACAATAACAGCgttgataatgaaaattctcCAGATGAAAATCGACTAGGTTTCCCCTTTCCTGTTCCCTCAGCAGCTCCTGGACACGTTACTCTGGAAGCGTTGCAAAATACCAAAGTGGCTGTAGCACAATTCGCTGCTACTGCCATGGCCAACAATGCGGATAACGAGGCAGCTCTACAAGAACTGGCGGTTTTGCAATCGACTTTGTTCACTTTGCAGCACCAACAAGTACTGCAACTGCAACTAATCAATCAACTTCAGCAACAATTGCAACTGGATAGACCTAAAGATGATGAACAAGGGTCTCCTGCACCTTCTGATAACCATGCAGAACAATCGCCAGATGGGGAGGAGCTTCCCAAGAATTCTCCTAAAAATCAATCTCGTGAACCTTCACCTCAACCTGTTGTTCAAGTAGCGGCTCGACCTAGTCCACCTCCTCAAATTCTACCCAACGTTAGTCAATCGATTAACACACAACTACCTCTACAAATTCAACCTCCTCTATGTTCAATATCATCATCTTTGGCTTCTACAATAATAACTCACAGCAACGATCCACCATCTATGGAAGAACCAAATACTTTGGAAATGCTCCAAAAGCGAGCACAGGAGGTGTTAGATAATGCCAGTCAAGGATTACTGGCTACGAATCTAGCGGATGAGTTAGCTTTTAGGAAAAACAAGGGATCAATGTCTCCATATGATTCAAAAGGAAGAAATGAGCCATTTTTTAAGCATCGTTGCCGTTATTGTGGGAAAGTTTTTGGATCTGATTCAGCCCTTCAAATTCATATCCGTTCTCACACTGGAGAGCGTCCTTATAAATGCAATGTTTGTGGCAGTAGATTTACCACAAAAGgcaatttaaaagttcatttcCAAAGGCACAGTGCTAAATTTCCGCATATCAAAATGAATCCAAACCCGGTTCCTGAACATTTAGATAAGTACCATCCGCCTCTGTTAGCCCAATTAGGACAACAACAATCTCTTTCACCTGGTGGACCTCCACATCCTCCGCATTTAGGATTCCCTGGCGTTCCTTCATTTCCCCCTACATCTTTACCTTTGTatcgaccccccattccacCACCTCCAGAATTAATCAATGCCAGACTTCAACCATCTCCTCACCGATTATTTCCACCTCATACCTTATTTATTAAACGAGAAGAGCAGGAAGCTCCGGCTGATTTACGAAAACCTCAAAGATCGCCTTCTCCTAAAGATATTAAACTGGAGACAGAAAATAAACCTActgaaaatgtagaaaaacCCGAATCTTTAAGTTCAGAATGCAAACAGGAACCTAATGAAAATGAACAGGAAAACGAGGTGGAAGCCGAACGATTTGGGTCACCCAATGCTTTTGAAGAATGCAGTAACGAAAGCAGGTTCAGCAATGACGACGAACAACGAAGTCCTGAAATGCAAGATGAACCTGAAAATTTATCCAGTAGCAGATCGAATATCATGTCAACTCCCTTAAGTATTTCCACAGGCCAAAGACTACCAGCAAATTTCTCATTTGGGCATCAAAGTTCACCACCAAGTAGCACTTCATCTGGAAGTTTAGGTCCATTTCCTTCCACTCCAATTCCAGATATCACTAAGGATCCTGCAATTTACACGAATCTTTTACCACGACCTGGCAGCAATGACAACTCATGGGAAAGTTTAATTGAAGTGACAAAAACATCAGAAACAAGCAAATTGCAGCAGCTGGTGGACAACATAGAGCATAAATTATCCGATCCAAATCAATGTGTTATTTGTCACAGAGTACTCTCTTGTAAGAGCGCATTGCAAATGCACTATCGTACTCACACAGGTGAACGACCTTTTAAATGTAAGATATGTGGTCGAGCTTTTACCACCAAAGGCAACTTAAAAACTCATATGGGAGTTCATAGAGCTAAACCTCCCGTGAGAGTGTTGCATCAATGTCCTGTTTGTCATAAGAAATTCACCAATTCCTTGGTACTTCAGCAACATATTAGGTTGCACACTGGGGAACCAACTGATCTCACTCCTGAACAAATACAGGCGGCCGAAGTAAAAGACTTTCCTTCACCTGGGGCTTTTCCAAGTCTCCCGAATTCCATGCATCCATTCCTCGGCCAGGGTTTTCCCGTTCCTGGATTATCACCACTAGGAAACCCTGGAATGCACCCGTTTCAAATCAAATTCGATAAAGACACAAGATCTGAACACGAAAGTATGGATGATGATGACGAGGACGATGACAATATGAGCGGAACGACAGATATTCAGAATATTCCTTCGTTTTCGGTTTCTCCTGGAAATAATGGAACAGTGGGCCAATTTGGAAGTGGAGAATTGAATTGTTCTAATGAAGATTTAAGTAGTCGTGTGATTTCTTCACCTCCAACCATGCAAAATGGCGAAAAGTCGCCTAATAGAAGTGTAACGAGTCGAGAGAGCGCAGAATCGCACAATCGCATGACCACAACACCCGTCCagATCCCCAGGCCGCCGTCCTCTCAGCACGCGGGCAGTCCAACTTCATCAGAATCTATGGGAGCCTTGGATTTGACCccaaaacaaaatcaaaattcgaTTACAAGTCCTGGACCTCCACCAACATTATTTTCAGCGTTCGGACTGTTGCCGCAAGTATCTCAAACATCAACTCCTCTAATGACCTCGGCCTTATCGTCTTTGACATCTTCAGTTCTCACATCCACCTCTTTTAGTCCATTGAGGTTGGCCGTTGGACCAGGTGCTAGTTTGGgCCGGGGAAATACGACGTGCAATTTGTGTTTTAAGACATTCGCTTGCAATTCTGCTTTGGAAATCCATTACAGGAGTCATACGAAGGAGAGGCCCTTCAAATGCACCGTATGTGATCGAGGATTCTCCACAAAGGAGAAATGCAACTGCAACAAGCAGAGGCGTATCTCGGAGGACGCAATGCCTCGGAAGTACCGCAACATCCCCTCAGTATTCCCTTTACCGATGAGTAGTAGTCCCGGATACGCCTCGACTTGGATGCAGCTTGCGGGTAATATGAAACAGCATATGCTGACTCACAAGATTCGCGACATGCCTCAGCAtatgttcgaaaataaaacTCCTTCATTGAGCGGAGATGATTCCACTCCTTTGCCAGCGAGTACACCCTCGTCGCAAAGAGAAAGATCTAGTGAGAGGGAGGTAATGATACCATCGTCTCCTCAAACTCCCGTACCACCGGTTGCGCAGCCCCAGGTCAACGTTCAACTTCCTGAGGTCAAAAACGAACAACCTGTTAAGAGGGAACCTACTGAGACGGAGTTACCACTTCCTAAACGTCCTCCAAGCTTGCAATCGAATAAGCACTTGTGCCACGTGTGCAATAAGAACTTTTCCTCCAGCTCCGCCCTTCAAATCCATATGAGAACCCATACGGGAGACAAGCCATTTAGGTGTACCGTTTGTCAAAAAGCATTCACAACCAAAGGCAACTTGAAGGTACACATGGGTACCCATATGTGGAGCAACGGGGCGTCGCGTCGAGGCCGTCGCATGTCCCTCGACCTTCCTCCCATACCCATGACGCCCAAGGATTCAGAATTTCTGCAACGGAGGCCCGACATCTTTTATCCATACCTTCCGGTTCCGTTCCTTAACGGCATGCAACAAAAGCTTAGTGAAATGCCGTCTTCAATGGCTCCAACGCCACAAAACGGGCTAACACCGTCACCAAAATATGGAGGTTTACTCGGTTTCGGTTATCCACCGCCAGATGGTACAAGAACACAATTAAATTCCCCAGAACGAGCGCCAGATCGGCCGCCCAGCGAACCAGACCCGAGACCCGCTCTCTGGGATTTGCATTTCGAGCAGCGAAAAGCTGCAGAAGCCCCTCGCGAGGACCTCCTGTCCGCTTCCAGGGAAGGACTGGCCGCTTGA
- Protein Sequence
- MCQRCQEQFTDVQDYLTHKAECEKKAIKHDDPAHSDPEDMVVSEEDDEDDVESGGKRLERMRRHRQDAANNNSVDNENSPDENRLGFPFPVPSAAPGHVTLEALQNTKVAVAQFAATAMANNADNEAALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLQLDRPKDDEQGSPAPSDNHAEQSPDGEELPKNSPKNQSREPSPQPVVQVAARPSPPPQILPNVSQSINTQLPLQIQPPLCSISSSLASTIITHSNDPPSMEEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKNKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQQSLSPGGPPHPPHLGFPGVPSFPPTSLPLYRPPIPPPPELINARLQPSPHRLFPPHTLFIKREEQEAPADLRKPQRSPSPKDIKLETENKPTENVEKPESLSSECKQEPNENEQENEVEAERFGSPNAFEECSNESRFSNDDEQRSPEMQDEPENLSSSRSNIMSTPLSISTGQRLPANFSFGHQSSPPSSTSSGSLGPFPSTPIPDITKDPAIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPVRVLHQCPVCHKKFTNSLVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGAFPSLPNSMHPFLGQGFPVPGLSPLGNPGMHPFQIKFDKDTRSEHESMDDDDEDDDNMSGTTDIQNIPSFSVSPGNNGTVGQFGSGELNCSNEDLSSRVISSPPTMQNGEKSPNRSVTSRESAESHNRMTTTPVQIPRPPSSQHAGSPTSSESMGALDLTPKQNQNSITSPGPPPTLFSAFGLLPQVSQTSTPLMTSALSSLTSSVLTSTSFSPLRLAVGPGASLGRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKEKCNCNKQRRISEDAMPRKYRNIPSVFPLPMSSSPGYASTWMQLAGNMKQHMLTHKIRDMPQHMFENKTPSLSGDDSTPLPASTPSSQRERSSEREVMIPSSPQTPVPPVAQPQVNVQLPEVKNEQPVKREPTETELPLPKRPPSLQSNKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDIFYPYLPVPFLNGMQQKLSEMPSSMAPTPQNGLTPSPKYGGLLGFGYPPPDGTRTQLNSPERAPDRPPSEPDPRPALWDLHFEQRKAAEAPREDLLSASREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -