Hham009534.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000007.1:412088-414034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5 2.1e+02 2.6 0.3 3 19 48 63 47 65 0.80 2 15 0.00063 0.054 13.9 1.9 1 23 70 92 70 92 0.98 3 15 0.0043 0.36 11.3 3.0 1 23 124 147 124 147 0.93 4 15 3.3e-05 0.0028 18.0 2.2 1 23 153 175 153 175 0.98 5 15 0.51 43 4.8 2.8 2 23 186 207 185 207 0.96 6 15 8.6e-05 0.0073 16.7 1.5 2 23 213 234 212 234 0.97 7 15 0.0027 0.23 11.9 2.7 2 23 239 261 239 261 0.94 8 15 0.58 49 4.6 1.4 1 23 316 338 316 338 0.94 9 15 0.047 4 8.1 0.8 2 20 346 364 345 367 0.94 10 15 9.6e-07 8.1e-05 22.8 2.9 2 23 372 393 372 393 0.97 11 15 2.7 2.3e+02 2.5 1.9 3 23 435 456 435 456 0.93 12 15 1.8e-05 0.0015 18.8 5.0 3 23 471 491 469 491 0.97 13 15 2.5e-06 0.00021 21.5 4.0 1 23 497 519 497 519 0.99 14 15 2.9e-06 0.00025 21.3 0.7 1 23 525 547 525 547 0.97 15 15 6.6e-05 0.0056 17.0 0.1 1 21 553 573 553 574 0.96
Sequence Information
- Coding Sequence
- ATGAAATACTTTCTACGCACAACAGTAATTTATATATCTTGTTTTAGGCTGTTTGTCAGTTGTGGCATATacattaaagaagaaattgatgCGAAGCCCTCAGATCAACCTTGCACGAGCAAAGaacaaaaagtaaacatttgcGATATTTGTGGTGTGATTTTCCAGGAACAGGATTTTCACATCCACAATCACATCCCGGACATTTACAGTTGTCGCTTTTGCGTCAAAACCTTCCAATCACAGCGAGCGCTCCAGGAGCATTTGTCGAAACATTCGGAAGAGCGTTCTTACAAGCACGATATTAAACAACAAATCTCCAATTGGAATAAAACGTTCTCGTCAACTACTCGAAAACCGTTGGGAGAACACGATTGTCGCCACTGTAAAAAATCCTTTGATTCGGTTAAGGATCTTGCCATGCACGTCAACCTCAATCATGCCGCACACCTACTCtacaaatgtaaaatatgcGATAAAGTGTTTAGAGGTGTAGGAACGTTCAGAAATCACAAACGTTTTCATAGAcgtaaaattgaagaaaaagaagatttgGAATGTGGTTTTTGTTCATTGAAATTACATTACAAAAAGGACTTTGACAATCATTTGAGAACGCATCAAAACGGGCCATTAAAATGTCACATTTGCAATAGAGAATTTTCAATGAGAAGACAATTGGCTGGCCATTTGAAGGTGCACAACAATGGGAATACCTGCGATATGTGCGAGAAGagattcaaaagtaaaaagttCTTGTTGATGCACAAAACCAGAATTCATGGCTTTGTTGAAGATGAGGTCATAGATGAGGTCATAGATGAGTTAGAAAAACTTCCACCttcgaaaaatagaaaaattcatgaaaaagaTCGCAATGGCGAGGAACATTCCTATCAATTTCGTCTTTCAACggttaagaaagaaaaagaacatcaGCTCAGTTTTGCTTGTCCAAGGTGCCCTGATAAATTCAAATCGTTACGTGGATTATTCTGCCATATGGAATTACATCCTGATGACAATGGTGAAATTCCTTGTCCCATTTGCCCGTACCTGACCAACAAAAAGCAGAAACTTCTACGTCATATGGCCTGTCATACCAGTAAAAACTATTGTCAAACCTGCAACAAAACCTTCAATAGCAGGGGGAACCTTCGAAAGCACATGCTACGACACGACgacagcaaaaaaaaaatttgcatcgTTTGCTCCAATGTGTTCTTTGGCGACAAAGCCTTGTTGCGTCATCAAATTCACATGCACAAGGCGGATATTTTGAACGATCCGAGTTTATTGTGGTGTGAAATTTGTCGtgtgaattttaaaacattaaatttacataaataccATATGGACAAGGCTCATACGAAAACTCTAACAGTGAAAACGGtgatcaaaaaatgtttgtgcGATATCTGTGGACGTGGTTTTAAAGATCAcgataatctaaaaaaacacaaaaagtcGCACACTGATCTGCGTCCGTTCAAATGTACCGACTGTGACAAGGCTTTTAAACATCGCTACGTTCTGACATATCATCAGCGAATTCACACTGGAGAACGACCTTACATTTGTGGTTATTGTAACAAGAGCTTTAGACAGTGGACACCTTTCAAAGTCCATTTGAGAGGGCACACAGGTGAAAAACCTTACGTCTGTAAATTGTGCAGTAAAGGATTTACAACTAATCAGGGACTCAAACTACATATTAATGGTTGCTTCGATTGTACAGAGtcagaataa
- Protein Sequence
- MKYFLRTTVIYISCFRLFVSCGIYIKEEIDAKPSDQPCTSKEQKVNICDICGVIFQEQDFHIHNHIPDIYSCRFCVKTFQSQRALQEHLSKHSEERSYKHDIKQQISNWNKTFSSTTRKPLGEHDCRHCKKSFDSVKDLAMHVNLNHAAHLLYKCKICDKVFRGVGTFRNHKRFHRRKIEEKEDLECGFCSLKLHYKKDFDNHLRTHQNGPLKCHICNREFSMRRQLAGHLKVHNNGNTCDMCEKRFKSKKFLLMHKTRIHGFVEDEVIDEVIDELEKLPPSKNRKIHEKDRNGEEHSYQFRLSTVKKEKEHQLSFACPRCPDKFKSLRGLFCHMELHPDDNGEIPCPICPYLTNKKQKLLRHMACHTSKNYCQTCNKTFNSRGNLRKHMLRHDDSKKKICIVCSNVFFGDKALLRHQIHMHKADILNDPSLLWCEICRVNFKTLNLHKYHMDKAHTKTLTVKTVIKKCLCDICGRGFKDHDNLKKHKKSHTDLRPFKCTDCDKAFKHRYVLTYHQRIHTGERPYICGYCNKSFRQWTPFKVHLRGHTGEKPYVCKLCSKGFTTNQGLKLHINGCFDCTESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -