Hham012604.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000003.1:1152212-1155861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.3 4.5e+02 1.6 0.1 9 23 258 272 256 272 0.86 2 13 0.045 3.8 8.1 0.2 6 21 282 297 282 298 0.95 3 13 6.9 5.8e+02 1.2 0.2 1 9 339 347 339 362 0.79 4 13 7.7e-06 0.00066 20.0 3.1 2 23 421 442 420 442 0.96 5 13 1.2e-06 0.0001 22.5 3.7 1 23 448 470 448 470 0.98 6 13 0.00022 0.019 15.4 0.8 1 23 475 498 475 498 0.94 7 13 1.3e-05 0.0011 19.3 0.5 2 23 519 540 518 540 0.97 8 13 0.0039 0.33 11.5 2.7 1 23 546 569 546 569 0.97 9 13 1.1e-05 0.0009 19.5 4.5 1 23 572 594 572 594 0.98 10 13 1.6e-06 0.00014 22.1 0.8 1 23 602 624 602 624 0.98 11 13 5.2e-07 4.4e-05 23.6 2.4 1 23 630 652 630 652 0.96 12 13 3.8e-05 0.0032 17.8 2.3 1 23 658 680 658 680 0.99 13 13 0.041 3.4 8.3 4.8 1 23 686 709 686 709 0.98
Sequence Information
- Coding Sequence
- aTGGAGAAACAAGACAACAAAATCGCTTTGTCTAATTTCGATTCGATATGCAGAGCCTGTTTATTGGAAAACGCCGAGTTAATGTCGATTTACGGTTTATATGTggaaaacgaagaaaaaactgcaaaaatcgaattaataaAGATGTTCGAACGTCATTGTGACATAGAggTTAATCTCCAAGATGAAAAGCCTCAACTTATATGCAAACCCTGTATACGAGTCTTTTGTGAGGCCTATGCGTTTTTCGACAAGTGCATGCGTTCAAATAAGATTCTAGATGATATTCTGTACGAACATAAACCGGAACAAGTCAAGACATGTAAcgagttgaaaaaaaatcctagGAAACGTTCCAGAAACAATAGACTAGCCTGCTGTAGTGATTTAGAAGAGGACAATTTGGGTAATGAGGACGACGACTCGGATTGGGAACCTTCAAGGGATATGGATGATGTGTCAATTAAACAGGAAAACGAATCAGAACTTGATGAAGAAGACTCATTTTCTGAAGACCATTTAGAGGATGTCAAAAGTGAAAGAAGGACTACCAgaaaGAAATTGCCATTGGTTGCTAAAAGACGAGGACGTCCAAGAAAAATCCACGACCACAGAAATGATAGTGAAGCTATTGAAAATCAACATAAAGAGCTCGTTTGTCGTTTGTGCAATGAAATTTTGCCTGATATGAATTCTTCAATTGATCATTACGATGAGCTGCATGCGCCCAAAATGCAAGTGGACGAGTGCATTTTCTGTGAACGACctaaattgtacaaaaaacgTGATAATCTCCTATACCATATGGGACTTCATTCCAAAGACAGTATCAAGTGCATTCCATGTAGGAAATATTTTCGAGACAAGGAATCTCTGCAGCAACACTTGAATGAATGCTTTAAAGTCAATAGTCATGACAGTATCATTAAACTTGAAAGCGACTTAAAATCGAGCCAATCAAATGTCACACAATTGTCACAAAAGGAATTGAGAGAGTCTCAATATGATGGCGCTTTCACCTGCAAACTGTGCAACGAGAAATTGGGTGAAATCGATTTCGTAATCAGCCACTTTGAACGTGACCATTTAGATGATCTGAGGTGCATCATATGTTTAAGAGCGTTTACTAAACAGGTGCCGCTTTTCCATTTGGGATTACATTCGAAGAAATCGCATGTATGCAGACCGTGTCGATTATTATTCAGGAGCAAACAAGAGTTTGATGAACACAACGCCAAATACGATCACGACAATTCTTTGTCGTGTAAAATATGCGGCAAGAAATTCACCAGAAACTATAAGAAGaataaacaCATGTTGAGTCATCTGAAAGAGAAGAATTACTCGTGTAATAAATGCGGCAAGACCTTTACCTATAAAACGAGTCTTGTAAGAcactttaaaatgcattttggtAAGAGATTTTTATGTTCATCGTGCGGAAACGCCTATACTACGAAATTTATGTTGCAacgacatataaaaataatgcacaCATTTGTGGATGACGATGGAAATCCCTTGCCGAAGCCGCCTCCAAAACCGGTTAATTTGCAATGCGAATTTTGCGGTGAAATTTTCACCACAAAATATGGCTACGGACGCCACATTAGACGACATCCAGAATTTAAGGAattcaaatgcaaaatttgttcatttatatGTGACACTCGGgaacAATTAGACAGTCACATGGAGAGCAAACATAACAAGCATACGTGCGAGGTATGTGGCAAAAGATTCCCATTTGAGAGCGAATTGAAAACGCATCACAGGAAACATGAGGACATTGCAATGGCGAGATTCAGGTGTGATGTTTGTGGCAAGACCGCTCGCACCCAAACTCAACTAAAGGTTCACTATCGCATTCATACGGGAGAAAGACCGTTTTCCTGCGACATTTGTGGCAAGAGTTTCAAGCAAACTGCCCATTTGAAAGTTCACATGTTCCAGCACACGGGCAAGATGCCTTTCAAGTgtaaaatttgtgaaaaatcttttccatTTCAACACGTCATGGAAATCCACTTACGCACGCATACTGGAGAGAAACCCTTTCAGTGTATGTTCTGCGGCAACGCTTACCACGACAGAACTACCATGCAAAAGcatcagaaaaaaaagcatCCAGATATGCCTGTTCAGAAGACGAACAGGAGCGAATATAAGATAAGCACATTGACGTGA
- Protein Sequence
- MEKQDNKIALSNFDSICRACLLENAELMSIYGLYVENEEKTAKIELIKMFERHCDIEVNLQDEKPQLICKPCIRVFCEAYAFFDKCMRSNKILDDILYEHKPEQVKTCNELKKNPRKRSRNNRLACCSDLEEDNLGNEDDDSDWEPSRDMDDVSIKQENESELDEEDSFSEDHLEDVKSERRTTRKKLPLVAKRRGRPRKIHDHRNDSEAIENQHKELVCRLCNEILPDMNSSIDHYDELHAPKMQVDECIFCERPKLYKKRDNLLYHMGLHSKDSIKCIPCRKYFRDKESLQQHLNECFKVNSHDSIIKLESDLKSSQSNVTQLSQKELRESQYDGAFTCKLCNEKLGEIDFVISHFERDHLDDLRCIICLRAFTKQVPLFHLGLHSKKSHVCRPCRLLFRSKQEFDEHNAKYDHDNSLSCKICGKKFTRNYKKNKHMLSHLKEKNYSCNKCGKTFTYKTSLVRHFKMHFGKRFLCSSCGNAYTTKFMLQRHIKIMHTFVDDDGNPLPKPPPKPVNLQCEFCGEIFTTKYGYGRHIRRHPEFKEFKCKICSFICDTREQLDSHMESKHNKHTCEVCGKRFPFESELKTHHRKHEDIAMARFRCDVCGKTARTQTQLKVHYRIHTGERPFSCDICGKSFKQTAHLKVHMFQHTGKMPFKCKICEKSFPFQHVMEIHLRTHTGEKPFQCMFCGNAYHDRTTMQKHQKKKHPDMPVQKTNRSEYKISTLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -