Basic Information

Insect: Hypothenemus hampei
Gene Symbol: -
Assembly: GCA_013372445.1
Location: JABRWK010000178.1:105627-109580[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00015 0.013 15.9 0.1 1 23 297 319 297 319 0.95

2 10 2.2e-05 0.0018 18.5 1.5 1 23 327 349 327 349 0.99

3 10 9e-06 0.00077 19.7 0.6 2 23 357 378 356 378 0.97

4 10 5.8e-06 0.00049 20.4 0.9 1 23 384 406 384 406 0.98

5 10 7.6e-05 0.0065 16.8 0.7 1 23 413 435 413 435 0.98

6 10 0.001 0.088 13.3 0.4 1 17 441 457 441 458 0.94

7 10 0.0007 0.059 13.8 0.7 5 23 458 477 457 477 0.93

8 10 4.7e-06 0.0004 20.6 2.0 1 23 483 505 483 505 0.99

9 10 1.6e-05 0.0014 19.0 0.4 1 23 511 533 511 533 0.97

10 10 0.00047 0.04 14.3 0.1 1 23 539 563 539 563 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00015	0.013	15.9	0.1	1	23	297	319	297	319	0.95
2	10	2.2e-05	0.0018	18.5	1.5	1	23	327	349	327	349	0.99
3	10	9e-06	0.00077	19.7	0.6	2	23	357	378	356	378	0.97
4	10	5.8e-06	0.00049	20.4	0.9	1	23	384	406	384	406	0.98
5	10	7.6e-05	0.0065	16.8	0.7	1	23	413	435	413	435	0.98
6	10	0.001	0.088	13.3	0.4	1	17	441	457	441	458	0.94
7	10	0.0007	0.059	13.8	0.7	5	23	458	477	457	477	0.93
8	10	4.7e-06	0.0004	20.6	2.0	1	23	483	505	483	505	0.99
9	10	1.6e-05	0.0014	19.0	0.4	1	23	511	533	511	533	0.97
10	10	0.00047	0.04	14.3	0.1	1	23	539	563	539	563	0.92

Sequence Information

Coding Sequence: ATGCCCAATAGTCCGGCTGTCTCTCCACAATGTCTCATATGTAATTCCAGTTGCCTGTCTGTAAGgaattcaattcaaattttcgcTAATAATGCGACTGATAATCTCCTTAATCTACCGAGAATCTTGGAATCCTTGTTGGGTAAACAAATCACCCAGGCATCAGCCCATTCGACTGTTGTGTGTAAAAAGTGTTACAAATTAATTGATGAATTTGATGAGTTACAACAACGAGTGACGGAAATTAAAAGCGAAATTACCGAAAATCATAAGGCCACATTACAGATTAAGGACGAAAGTGCAGACGAATCGAAATCGAACAATCACaatgtgaaaaatgaaataaaaataaatgttcaagaattgcccaaaaaaatattagatatacCATCGAGTGATGAGGAATCACCTTCAGGCTGTGCCAAaacatttgaagaaattgaaatggcTTTGGTGAAAATTCATCAGGATGAAGGTGAAAGTGATTCGAATGTTATGGACATGGAGACTAATGAAGGGCAATCATTACGGTCCTTTCAAGAAGCCAATTCGGATAGTGATTGCGAAGAATTCACTAGTGGTGGCCATACTCCACCGAATGatGAGAACACGGCGATTAAAATGGAACCAAATACTGAGGAGTCCAATGGGGAATTTTCACAGGATACTATTACCAAACCGAATATATTAAAGCGCAAACGACAAACGAACGGAGTCAGTTACACAGATAATGCAATCAAGGAACCAGATCACACTAATATAAATGTGCCCGTTGTGACTAGAGAAGGCAACATTTACACTTGTTTATTGTGTACGGGGGATCAAACGGTTGCAGGAGAAGCAAAATCGATAATCGCCCATATGAAAGAGGCCCATGATACCCGATTGTATATTTGTGATGTTTGCGGCATGGATTTTCGACGACGTAACTACCTTTCCGCCCATGTGGATGAACACGTAGCTAACGAAGAGGGCGATTTCCAGTGTGAAGTGTGCAatcgaattttcaataatctaAGACTGTTTAGGATACATAGAAGAATGCACTTGCCTCATACCAAGGCTTGGGTCTGTTCCACCTGTGGTAAAAGGTACAGCAGTAAGAATTTGTTGGAGGAACACACTAATACGCATTTGGGTGTGAGACCGTACGTGTGTAGCAGTTGCGGCAAAGGTTTCGCCAGTAAATATACGTTTAGGGCGCACGAAAAGACCCATGAAACACGACCTAGGCCTTATAAGTGCGAGCAGTGTGGCAAATCATTTCTCAGTCAACAAAACTTGGGGCAACACGAGAAAATTCACACGGGAGTTAAAGACTATCAGTGTCATCTCTGTAACAAACGATTTGGATCTGCTCACAATCTCGAAGATTGCGGTAAATGCTTTAAGCGTAGAAGACTGTTGGATTATCATATCAAGGCAGCACACACTGGCGAGAGACCGTACAAATGCGATATATGTGAAGCCACTTTTGTTTATCCGGAACATTTCAAGAAACATAGGCGTATTCATACGGGAGAGAAGCCCTACATGTGCGAGGTATGTGGAAAAGCGTTTAATTCGCGCGATAACAGGAATGCACACCGATTTGTGCATTCAGATAAGAAGCCTTATGAGTGTTTAGTTTGTGGTATTGGTTTTATGCGCAAACCGCTTTTGTATCAGCACATGCAAATGCAGGGACATTTAAACGACACGATTGTTGTCAATCAACCCCGCCTCACTTTAGATGATAAAATTGATATGGACACCGAGAGTCACGTAGTTGCCATAGCTGAAATCGAGGAAGAaccgaaaattttcattgacgGTACAGAGGACAATGAtgatcaaattattattgacgGTCGAAAAATCGCTTTTGTAGCAGACAGTTCGGAAAATGAAGAGGACGCTGAAGAGGTTGTAGATGAAATTGAGCAAGTGATAGCAACTGATGAAGATTACGAGGAAATTTTGTCTTCTGAAGCAATAACCGCTGGCGAGACACAAATAATTGACACTGAAGACGGTCCGATTCAATTGGTAAAAgtgaaaatcaatgaaaacGGAAAAGAGGAGGAAGCCTGGATCAAAATTGTGCCCGAAGAAACGtaa
Protein Sequence: MPNSPAVSPQCLICNSSCLSVRNSIQIFANNATDNLLNLPRILESLLGKQITQASAHSTVVCKKCYKLIDEFDELQQRVTEIKSEITENHKATLQIKDESADESKSNNHNVKNEIKINVQELPKKILDIPSSDEESPSGCAKTFEEIEMALVKIHQDEGESDSNVMDMETNEGQSLRSFQEANSDSDCEEFTSGGHTPPNDENTAIKMEPNTEESNGEFSQDTITKPNILKRKRQTNGVSYTDNAIKEPDHTNINVPVVTREGNIYTCLLCTGDQTVAGEAKSIIAHMKEAHDTRLYICDVCGMDFRRRNYLSAHVDEHVANEEGDFQCEVCNRIFNNLRLFRIHRRMHLPHTKAWVCSTCGKRYSSKNLLEEHTNTHLGVRPYVCSSCGKGFASKYTFRAHEKTHETRPRPYKCEQCGKSFLSQQNLGQHEKIHTGVKDYQCHLCNKRFGSAHNLEDCGKCFKRRRLLDYHIKAAHTGERPYKCDICEATFVYPEHFKKHRRIHTGEKPYMCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGIGFMRKPLLYQHMQMQGHLNDTIVVNQPRLTLDDKIDMDTESHVVAIAEIEEEPKIFIDGTEDNDDQIIIDGRKIAFVADSSENEEDAEEVVDEIEQVIATDEDYEEILSSEAITAGETQIIDTEDGPIQLVKVKINENGKEEEAWIKIVPEET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -