Basic Information

Insect: Hypothenemus hampei
Gene Symbol: -
Assembly: GCA_013372445.1
Location: JABRWK010000007.1:454375-495391[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0024 0.2 12.1 0.1 2 23 360 381 359 381 0.91

2 18 3.5 3e+02 2.2 4.4 1 23 387 409 387 409 0.97

3 18 0.0071 0.6 10.6 1.9 1 23 415 437 415 437 0.89

4 18 6.9e-05 0.0059 17.0 3.6 1 23 443 466 443 466 0.98

5 18 0.00037 0.031 14.7 5.9 1 23 478 500 478 501 0.95

6 18 0.0013 0.11 12.9 1.0 3 23 512 532 511 532 0.98

7 18 2.9e-07 2.5e-05 24.4 1.2 1 23 538 560 538 560 0.98

8 18 3.2e-07 2.8e-05 24.3 0.7 1 23 566 588 566 588 0.98

9 18 0.01 0.89 10.1 0.1 1 21 594 614 594 615 0.94

10 18 0.0005 0.042 14.3 0.5 2 23 694 715 693 715 0.91

11 18 0.091 7.7 7.2 6.1 1 23 721 743 721 743 0.97

12 18 0.13 11 6.7 2.3 1 20 749 768 749 771 0.82

13 18 1.3e-05 0.0011 19.3 3.0 1 23 777 799 777 799 0.98

14 18 4.5e-05 0.0038 17.6 0.9 1 23 811 833 811 833 0.97

15 18 0.0013 0.11 13.0 0.3 3 23 842 862 841 862 0.98

16 18 8.3e-05 0.007 16.7 3.2 1 23 868 890 868 890 0.98

17 18 0.12 10 6.8 4.1 1 23 896 918 896 918 0.96

18 18 0.1 8.7 7.0 0.8 1 21 924 944 924 945 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0024	0.2	12.1	0.1	2	23	360	381	359	381	0.91
2	18	3.5	3e+02	2.2	4.4	1	23	387	409	387	409	0.97
3	18	0.0071	0.6	10.6	1.9	1	23	415	437	415	437	0.89
4	18	6.9e-05	0.0059	17.0	3.6	1	23	443	466	443	466	0.98
5	18	0.00037	0.031	14.7	5.9	1	23	478	500	478	501	0.95
6	18	0.0013	0.11	12.9	1.0	3	23	512	532	511	532	0.98
7	18	2.9e-07	2.5e-05	24.4	1.2	1	23	538	560	538	560	0.98
8	18	3.2e-07	2.8e-05	24.3	0.7	1	23	566	588	566	588	0.98
9	18	0.01	0.89	10.1	0.1	1	21	594	614	594	615	0.94
10	18	0.0005	0.042	14.3	0.5	2	23	694	715	693	715	0.91
11	18	0.091	7.7	7.2	6.1	1	23	721	743	721	743	0.97
12	18	0.13	11	6.7	2.3	1	20	749	768	749	771	0.82
13	18	1.3e-05	0.0011	19.3	3.0	1	23	777	799	777	799	0.98
14	18	4.5e-05	0.0038	17.6	0.9	1	23	811	833	811	833	0.97
15	18	0.0013	0.11	13.0	0.3	3	23	842	862	841	862	0.98
16	18	8.3e-05	0.007	16.7	3.2	1	23	868	890	868	890	0.98
17	18	0.12	10	6.8	4.1	1	23	896	918	896	918	0.96
18	18	0.1	8.7	7.0	0.8	1	21	924	944	924	945	0.94

Sequence Information

Coding Sequence: ATGGATAGTCCGGGTGAAATTTCGAGCCTTTGTCGACTGTGTTTAGTTAAGGACCAAGttaatattccaattttcGAGGAACAGGGTGATATTAGACagattttcctcaaaattagTTCCTGTCTACCAGTTAAGgtTTCTAGAGACgataatttaccaaaaaatatatgtgacGGTTGCTCGAATAAgttagatttattttatgatttttggaGTTCATCAGCTAGCGCCGAAAAGACGTTACTATCATGGCTTGGGGAAACGGAcgcagaagaaaaaattgataccGTTGCGCAGCAGATCGCTAAATCTACTGAGGCTAGAGTTAAGTTAGAGTCCGAAGCAGATCCATCTGctgatatttttgaagaatcaCCTTCATCATTTGACGAGggtaccAAAGACGAGACTGAGGCGCCGCCTGCAAAACGGGTACGTCGATCTGCAGCCGTTAAGGCCCAAATTAACATTGCACCTGATTCAGAGGATGATGACGAGATGGACAGTGCAGAACCATTAACAAAATTGGAAGATGAGAGTGAAGATAGTGACGGAGAGGAAAAAGATCCTTCTTATGCAGAAGTACCTGGAACAAGTGCTGATGATGATCAGGCTGGACCATCAGGCGTTGGCAAGGATGGAGTTGAAGCACCGTACTTTGATACGTCAATCCTCAATAATCTAATCTATGGTCCAGGAATATCCATAACCCCAGTGAAGCCAGAATGCTATTCAAACTATTCCAGTTATAATCATTCAACTTCTTCGTCGTCATCAAACAGtcatttaaactttgataactTTAGCGCTTTTAATGGCATTAACTCCTCCCTTTTCAATAAGATTCTGGAACCGGAATTGAAAATGGACGATTTTGAAGTaggaaaaagtgaaattttgaaaCCGGATTTCTTGAATACATTAGTTCAAGTGAAACAAGAACCAAACCCAGTTACTCCAAATATATTAGACtgtcttttaaaaaaggaGAGTGCCACAAAACAGAGCagaaccaaaggaaaacgtgGACGggataaagaaaaacaaccaCCACCTATTGAATTGGACGAACCAGTAGAATGTGACGTGTGCAACAGGACCTTTAGAAACAATGTAGCATTTGCGCTACATTCAATCGAGCACTCACAAGATAATAAGTATTATTGTCACTTGTGCGAGTTTAAGAATTCCTCCAAATACCATATAGAAATGCACGTGAGAGCTCATGAAGGTACTACCAAATATAAATGCGAGATTTGCAATAAGGCTTTTACGATAAGCACTCACGCAATagaacataaatattttcatacgGGTGAAAAACCTTTCCAATGTGAAATTTGTGGTAAACATTTTATGTTCTCATGGTTCCTTACGAGCCATCGAAGAACCCAACATTGGGAAATTGTCACGGGAAGCCCATTAGTAAAATATGACTGTACCATTTGCAAAAAACACTACACGTCATCAACTGGACTTAAACGACACAATATGACGCATCATGGATCCCCAGGAGTGGACCATTCGGTGCTTTGCGACATCTGTGGCAAAAGTCTTTCATCTAAAGAAAAACTCAAATTCCATCGACGTATTCATACTGGTTACAAACCCTTCTCATGCGAAATTTGCACTAAGAGTTTCTCAAGAAAAGAACAACTGAAAGAACATGAAAGGGTTCATACAGGTGAAAAACCTTACATCTGTAAATATTGTGGGAAAGGATTCACTCAAAGGTCACCTTTGAGGATTCATGAGCGCACTCATACTGGAGAAAGACCTTATACATGTATGATTTGTCAAAAAGGTTTTATTTCGAAAGGAGTCATGGACACACATATGAAAAGTTGTTCTGTAGCGAGGACAGTgtCTTTAAATACTCCCACCCTTCACAAACTCGCCTTCGTTCCAGGAGTCTTATTTATTCCAATAAAGCAAATACCTGTCGCCAGATTTACTACTACAAGTAGTTACTCTAAACCTCAACAagattttcaaacatttgcaataaaatttaaaaatataaatgaacgAGATTCGAAATCTCAACGATCCATGTCTGACGATTTACAGATACGAATCGAGTGCCACATTTGCAATAAGAGTTTCAACAGCAATGTAGACTATGCCTTACACTCAATCGAACATTCGACTGATCACAAGTACCATTGCCACTTGTGTGATTCGAAACGTCGATCAAAGTATCAATTGAGGCAACATGTGAAAGCTCATGAAGGTACTACCAACTTCAAATGTGAGATTTGCAATAtgtcttttaaattgaaaaacaggGCGAAAGAGCACAAGTATTTTCATACTGGCGAGAAGCCATTCCAATGTGAAGTGTGTGGAAAAAGATTTACTTTTTCATACCATTTGGGAAATCATCGCAAAGCACACGAACAATCTAAGCTGGATGGTGTAAAACCCAAATTCGATTGCGAGATTTGCAATAAACAATATGAGTCTCGTGGTGgctTTCGTAATCATATGAAAAGTCACGAAGAATGTGATCAGTTAGTATTATGCGACttatgtggaaaaaaattaaaatctgtcAGCCTCCTGCGACTTCATGAGCGGGTACATTCAGGAAACAAGCCATTCTCCTGTGAAATTTGCTCAAAGAGTTTTTTGAGAAAGGAACACCTCAAAATACATAAGCGAATACATACCGGAGAAAAACCGCATGTTTGTCGATTTTGTAGTAAAGGATTTAATCAGCGAACGACCCTTAAATTTCACGAACGCATTCATACTGGCGAAAGACCTTATTCGTGCAATCGGTGCCAGTTCAGGTTCATTTCGAAAGGAGCAAGAGATTCTCATATGAAAAACTGTAAGAAATAA
Protein Sequence: MDSPGEISSLCRLCLVKDQVNIPIFEEQGDIRQIFLKISSCLPVKVSRDDNLPKNICDGCSNKLDLFYDFWSSSASAEKTLLSWLGETDAEEKIDTVAQQIAKSTEARVKLESEADPSADIFEESPSSFDEGTKDETEAPPAKRVRRSAAVKAQINIAPDSEDDDEMDSAEPLTKLEDESEDSDGEEKDPSYAEVPGTSADDDQAGPSGVGKDGVEAPYFDTSILNNLIYGPGISITPVKPECYSNYSSYNHSTSSSSSNSHLNFDNFSAFNGINSSLFNKILEPELKMDDFEVGKSEILKPDFLNTLVQVKQEPNPVTPNILDCLLKKESATKQSRTKGKRGRDKEKQPPPIELDEPVECDVCNRTFRNNVAFALHSIEHSQDNKYYCHLCEFKNSSKYHIEMHVRAHEGTTKYKCEICNKAFTISTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIVTGSPLVKYDCTICKKHYTSSTGLKRHNMTHHGSPGVDHSVLCDICGKSLSSKEKLKFHRRIHTGYKPFSCEICTKSFSRKEQLKEHERVHTGEKPYICKYCGKGFTQRSPLRIHERTHTGERPYTCMICQKGFISKGVMDTHMKSCSVARTVSLNTPTLHKLAFVPGVLFIPIKQIPVARFTTTSSYSKPQQDFQTFAIKFKNINERDSKSQRSMSDDLQIRIECHICNKSFNSNVDYALHSIEHSTDHKYHCHLCDSKRRSKYQLRQHVKAHEGTTNFKCEICNMSFKLKNRAKEHKYFHTGEKPFQCEVCGKRFTFSYHLGNHRKAHEQSKLDGVKPKFDCEICNKQYESRGGFRNHMKSHEECDQLVLCDLCGKKLKSVSLLRLHERVHSGNKPFSCEICSKSFLRKEHLKIHKRIHTGEKPHVCRFCSKGFNQRTTLKFHERIHTGERPYSCNRCQFRFISKGARDSHMKNCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -