Basic Information

Insect: Hypothenemus hampei
Gene Symbol: -
Assembly: GCA_013372445.1
Location: JABRWK010000007.1:445273-448330[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.041 3.5 8.2 0.4 1 21 18 38 18 39 0.88

2 15 0.0059 0.5 10.9 0.0 2 23 104 125 103 125 0.91

3 15 0.58 50 4.6 4.1 1 23 131 153 131 153 0.97

4 15 0.0015 0.13 12.8 0.7 1 23 159 181 159 181 0.91

5 15 4.2e-05 0.0036 17.7 3.4 1 23 187 210 187 210 0.98

6 15 4e-05 0.0034 17.7 3.4 1 23 222 245 222 245 0.94

7 15 0.0023 0.2 12.2 1.2 3 23 256 276 255 276 0.98

8 15 2.2e-07 1.9e-05 24.8 0.6 1 23 282 304 282 304 0.98

9 15 4.3e-08 3.7e-06 27.1 1.1 1 23 310 332 310 332 0.98

10 15 0.00019 0.016 15.6 0.1 1 21 338 358 338 359 0.96

11 15 0.0001 0.0087 16.4 0.1 1 23 380 404 380 404 0.96

12 15 0.0086 0.73 10.4 0.1 2 23 529 550 528 550 0.96

13 15 0.28 24 5.6 3.5 1 23 556 578 556 578 0.97

14 15 0.013 1.1 9.9 2.1 1 23 584 606 584 606 0.89

15 15 6.8e-05 0.0058 17.0 2.6 1 23 612 635 612 635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.041	3.5	8.2	0.4	1	21	18	38	18	39	0.88
2	15	0.0059	0.5	10.9	0.0	2	23	104	125	103	125	0.91
3	15	0.58	50	4.6	4.1	1	23	131	153	131	153	0.97
4	15	0.0015	0.13	12.8	0.7	1	23	159	181	159	181	0.91
5	15	4.2e-05	0.0036	17.7	3.4	1	23	187	210	187	210	0.98
6	15	4e-05	0.0034	17.7	3.4	1	23	222	245	222	245	0.94
7	15	0.0023	0.2	12.2	1.2	3	23	256	276	255	276	0.98
8	15	2.2e-07	1.9e-05	24.8	0.6	1	23	282	304	282	304	0.98
9	15	4.3e-08	3.7e-06	27.1	1.1	1	23	310	332	310	332	0.98
10	15	0.00019	0.016	15.6	0.1	1	21	338	358	338	359	0.96
11	15	0.0001	0.0087	16.4	0.1	1	23	380	404	380	404	0.96
12	15	0.0086	0.73	10.4	0.1	2	23	529	550	528	550	0.96
13	15	0.28	24	5.6	3.5	1	23	556	578	556	578	0.97
14	15	0.013	1.1	9.9	2.1	1	23	584	606	584	606	0.89
15	15	6.8e-05	0.0058	17.0	2.6	1	23	612	635	612	635	0.98

Sequence Information

Coding Sequence: ATGCCTTTACAAAGAAGTCCTCTACAAAGAAGTCCATTTAAGGCACAACAATTCTCATGTGAAATTTGCTCAAAGACTTTTTTGAGAAATGGatatcAAATCAAACACGAAAAAGTCAACCGAAATTTCACTATAAAGACCATTAAACCAGAAGTTACTTTAGAAGAACCtgattttcctttaattcCAGAATCAAATCGGGTCCAAACTCGTAAAAGAGGCCGCAAGAAAGgagtaaaaatatcaaagtcgCAAGGAAAAGTCCGAAAATGTAGTCAACCTGCTCCAATCGAATTGGACGAACCCATTGAGTGCGACATTTGCAACGAGACTTATAGAAATAACGTCGCTTTTGCCATTCACTCAATAGAACACAGTCAAGATGGACGATACAGTTGTCACTtatgtgattttaaaaatacttccaAATATCATATCGAATTACATGTGCGCGCCCATGAAGGTACTACTAAATATAAATGCGAAATCTGTTCAAAAGCGTTCACAGTTAGCACCAACGCTATAGAACACAAATACTTTCACACAGGAGAAAAGCCATTTCAATGTGAAATATGTGGAAAACACTTTATGTATAGTAGATTTTTAGCTTCCCATCGCCGTACTCAACACTGGGAGATCATGACAGGTACACCGTTAGTGAAGTACGACTgcaaaatatgcaataaacaTTACACGTCTTCGAGTGGACTGAAACGTCACAATTTACGCAATCATAATACCGAAGGCATAGACACTAGTGTACTTTGTGACACCTGTGGGAAGCGTATTTCAAGCaaagaaaagttgaaattcCACATGCGCATTCACACTGGTTACAAACCATTTTCCTGTGAGGTATGTGGCAAATCTTTCACGGAGAAAGAAAGGTTGAAAGAACACATGCGAGTTCATACCGGTGAAAAGCCGTTCGCCTGCAAGTATTGCGGAAAATCGTTCACGCAACGATCACCTTTAAAAATCCACGTACGCACACATACTGGAGAACAACCCTATGTATGTCGTCTTTGTGGAAGAGGTTTCGTGTCCAAAAGCGCCATGGATGCCCATATGAAGAGTTGTTCCGCTTTATCGATACCAAGCAGCAATCCAGAACCGCAGAATCGCAATAATAATTGCTTTATTTGCACCATGGatgattgcaaaaaaatatacgggTCGAAAAGTGCCCTTGAAGCACATATGACCGTGCATCAGCAGCCGCCTCAAGATTATAACTACCCTCCCGAAAGGGGTGTTCAATTGCAGGAACTATTCGAAAGGAGAAAGTTTGCGGAATCGTTGAGCGAATTGAGTAAGGATTTTTCTGGACAACTGGAAGATTGCATTGATTTTACGCAGAGGAGGATTGAAATTCGCGATAGACCAAGTGGTTCTGGAGGATTTGAGTTTGAAGACGAgtgtaaaattgtaataaaaaaggaagaaCTTTGCCTGGAAGAACCAAAAGTCTCAAAGCTGCCATCACGTAAATCTAAGgttcttaagaaaaaactaaaaatggaaaagtcaCATTCCAAACGCGTGAAAAACCATCCACCCCCCATTGAACTAGACGAGCCAATTGAATGCGAAATTTGCAACTCCACGTATAAAAACAACGTAGCCTTTGCCCTGCACACAATCAGGCACAGTGacgataataaatattcctgCCATTTGTGCCCTTACAAGAACACCTCTAAGTATCATATAGAAATGCACGTAAGAGCTCATGAAGGTACTACCAAGTTTAAATGTGAGGTGTGCCAAAAAGCATTTACAGTCAGTACACATGCGGTCGAACACAAGTACTTTCATACTGGAGAAAAACCGTTTCAATGCGAAATCTGTGGAAAACATTTCATGTTCTCCCGATTCCTGGCGGCACACAGAAGATCACAGCATTATGAAATTCTCACTGGAAGCCCTTTAGTCAAATTCGATTATTCGCATATGAAAAGCTGTGGAGGAAATGTGGTTAGTGCATTTGCCTCCACATGGATGGGCCATCCGTTGCCTCAATTGAGTCAATTGACCCAACTGGGTCAGCCCTCAAAATATTTCTCCTTATAA
Protein Sequence: MPLQRSPLQRSPFKAQQFSCEICSKTFLRNGYQIKHEKVNRNFTIKTIKPEVTLEEPDFPLIPESNRVQTRKRGRKKGVKISKSQGKVRKCSQPAPIELDEPIECDICNETYRNNVAFAIHSIEHSQDGRYSCHLCDFKNTSKYHIELHVRAHEGTTKYKCEICSKAFTVSTNAIEHKYFHTGEKPFQCEICGKHFMYSRFLASHRRTQHWEIMTGTPLVKYDCKICNKHYTSSSGLKRHNLRNHNTEGIDTSVLCDTCGKRISSKEKLKFHMRIHTGYKPFSCEVCGKSFTEKERLKEHMRVHTGEKPFACKYCGKSFTQRSPLKIHVRTHTGEQPYVCRLCGRGFVSKSAMDAHMKSCSALSIPSSNPEPQNRNNNCFICTMDDCKKIYGSKSALEAHMTVHQQPPQDYNYPPERGVQLQELFERRKFAESLSELSKDFSGQLEDCIDFTQRRIEIRDRPSGSGGFEFEDECKIVIKKEELCLEEPKVSKLPSRKSKVLKKKLKMEKSHSKRVKNHPPPIELDEPIECEICNSTYKNNVAFALHTIRHSDDNKYSCHLCPYKNTSKYHIEMHVRAHEGTTKFKCEVCQKAFTVSTHAVEHKYFHTGEKPFQCEICGKHFMFSRFLAAHRRSQHYEILTGSPLVKFDYSHMKSCGGNVVSAFASTWMGHPLPQLSQLTQLGQPSKYFSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -