Hham016438.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000060.1:263853-271174[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9.2e-05 0.0078 16.6 1.5 2 23 168 190 168 190 0.95 2 21 0.48 41 4.9 1.4 1 21 346 366 346 367 0.94 3 21 0.11 9.8 6.8 6.5 1 23 396 419 396 419 0.93 4 21 0.073 6.2 7.5 0.4 1 23 453 476 453 476 0.92 5 21 8e-05 0.0068 16.8 1.3 2 23 564 585 564 585 0.97 6 21 0.13 11 6.7 0.1 1 23 606 628 606 628 0.89 7 21 7.9e-05 0.0067 16.8 1.1 2 23 632 653 631 653 0.96 8 21 9.3e-06 0.00079 19.7 0.2 2 23 677 698 676 698 0.97 9 21 0.016 1.3 9.5 1.5 2 23 718 740 718 740 0.94 10 21 0.0029 0.25 11.9 2.7 2 23 753 774 752 774 0.98 11 21 0.012 1.1 9.9 1.0 2 23 794 815 793 815 0.97 12 21 0.00016 0.013 15.9 3.8 1 23 842 864 842 864 0.98 13 21 0.13 11 6.7 0.2 3 23 879 900 878 900 0.94 14 21 0.0024 0.21 12.1 0.4 1 23 910 932 910 932 0.94 15 21 0.0049 0.42 11.1 6.1 1 23 943 966 943 966 0.97 16 21 0.00092 0.078 13.4 2.8 2 23 986 1007 986 1007 0.92 17 21 0.53 45 4.7 0.1 1 23 1047 1070 1047 1070 0.95 18 21 0.0006 0.051 14.0 1.1 2 23 1081 1102 1081 1102 0.97 19 21 0.00026 0.022 15.2 1.5 1 23 1137 1160 1137 1160 0.96 20 21 1.1e-05 0.0009 19.5 1.3 1 23 1168 1190 1168 1190 0.97 21 21 0.00012 0.0098 16.3 0.4 1 23 1212 1235 1212 1235 0.94
Sequence Information
- Coding Sequence
- ATGATGGATATCGAGTCATCAACAACAAGCAGACCGATGGACGTGCAAGCCGTTTGTCGTTTGTGCCTTTCCGAACGGACGGATgcattaaaatcattatttgatGATGAACTGGGTCCGAATCGACTTCCCCAAAAGATCGAGCTTTTGCTACAACTGAAGatcaACAAAATGGATCGAATCACTACCTTGATATGCAACGACTGCATTATCAGGTTGGACACTTGGTTCTCGTACAAGAAACAGTGccataaaaatcaaatcaaattaaatgattGGTTAAATCAATCTAAACCGAGCGGTCCCGAAATACAAGAAACGgTATATAACATCAAACAGGAACCAATAACCGAATCAGAATCGTCATTACTGCCAATCAAAGCTGAAATCAACTATGAAGATGACGAATTCAATGAAACTGTACAGCTCTACCAACACAATGATGATTCCACATTCATGGATGACGAGGACGTCGACAATATGGAAAGTGAAGAAGATCGTCGTTGTCCGGATTGCGGAAAAATGTTTGACAGTTCTAGAAATCGTCGTCGTCACGAAAGTAAAATGCACGCAAAAAAGGACCGCAGATGTCAAATGAAAGAAATCAAAAAGCCACAAGACGATCGAGTTGATTCGAGTCAAACTCAGTTAGAACAGGCCACTTTAAACGACTCAAAAACTAGAGAAGACACTCAATTAATTGAATCTAATACATCCGTGAATTCTCAGGcATGTCAAGACGATGAACCACCTAAATTAGATCCCATTGGTAATCATGAAAGTGAAGCAACTGAAAAACATAATGACAATgacgaaaagaaaatcaagtttGCAGCTGGTCTACAACTGTTTCAAAAAGATTCATCACCAATTGAATTACAATCcttgtcaaaaattgaattgagctatatagaaaaatgcaaagcAATGGTGTCTATGTTCCATACGTTTCAATGTGCCTGCCACAACGTCCAACACAAAACTCTACGTAATTTGCTATCCCATTTACGGGAAACACGTATTTGGTTTCCATTGTTTACCTGTTACAATTGTATGATTTCCTTGACGGATCGATCGACATTCAACAGGCATTATTCGAAATGTTCCAGGCCCCTGTTGGAGTCGTTAACGAAACTGTCAAATTTAAGGAAAAGAAGCGAACTGAAACCTAGACTGTATCAGAACTACAAATGCAATCGTTGCAAGTTTATGTTCAGTTTTCATGAAGACTTTTGCAAACATGTCGAAGAGGATCACGTGAATGATTTGATTACACCATTTTACTGTTCTtgtcgattcgtttttgataATCCAGAGGAATACAAAGCGCATTGTTACACTTCCTGTGTATTGTCCTATTACTGCGATATTTGTTTCATAACCACATCTACCATTGAGGAGTTTATTAAACATTCACAAGAGAACCACGACAGTTCAGAAGGTTTCCTTTTGCaacaagaaaacaattatGTTCCAAGAAACCATACAATCAGGCACAAAGAAGCTGACGATGAAGCCAACGTTTTAGAAGGGAAACGGGAACGAAGAAAATCCTCAAAAGAGCCCATAATGGTGCAAATTTATGACAACGAAATCCCCTCTGATTCCAAAGACATTAGTACAAGTGCAGTaaagaaaatgattgaaatggATTTAGGAATGGAAATTGGTTGGAGCAGAAGTCCAGCATCCTGTCCGTTATGCAAAAAACGTTATTCTAGTGTTAGTAACATGGTGCGCCATTACAAGACTCATATAGAACGAAAAGAAATCGAAATACCAAAGCTAGAGAACGAAAGTGAAAATGAGGATTTGTATACTTGTCCGGATTGTGGAGGAGTGTATCCCGCCTCGAAATGGAAATTGCACTTGCAAGAGAAACATTCTATATTAAAATGCACTGAATGTGACAAACAgttcaattttcaaagtgaattAGATCAACATAGGAGCGTTCATTTGAACCTGAAAGTGTTCAGGGATTCAAAAACTCACGCTTATAAGTCGACAATGGTGAGCCCGTCAATTGAGTGTGACATTTGTAATGAAGTCTTTGCCACTaaagaagaattgaaaaatcataaatcgACTCATGATGCTCCAAATGACGATGAACCACCTGTAGTATTACTGGAGAACGCTGACAGGCCATATTGTGAGACTTGTGAACGTCATTTTGCATCAGACAAGTCCCTTAAAGAacacattattaataaacacgGTTCAtctttcttaaagaaaaaggaGTATCCGAAAAAGTGTGATTTATGTGACAAGGTATGTACCACAGGTGCCGCTTTCAAGAGCCACAAACGTATGCACGACCGTATTAGTATGAgacaagaagaagaacaacGTGAGAAAAACGAGTTTCCAAAAAAGTGCGAATACTGCGATCAGGTGTGTGCAACAGGGGCGAGCTTGTATCTTCATACACAGATGCATGAACGTGTCACTTTAGGcgaattgaagaaaaagaagaaagtcGAAGTGATAAAGCCAAAAGAGGGCGATGAATCTTATCATACGTGTAACAAATGTTTCAAAGTATTCGCCACCAAAGGTAGATTGaaagaacatttaaaatcacatggtatttttaataaaggttTGAAAAAGGGTAGGAAAGTCCTTTGCGATCTATGTCATATCGCTTTAGATAGTCCAGAAGAATTACAACAACACAAAAATGAAGAACACAATGAAGAAGATATGCTAGATATCGTGTACGCTTGTAATATTTGCGATGAAATTTGCGAAAGCAAGGAACAACTTGCACAGCACAAAACCGCCCATGAATCTAAACCAAAATCTAATAGTAAAAACTTCTATTGTCAATATTGTAAAGTGCACTTTGAATCACTAAACGAATTGACGAAACATATGCACAAGCAACATGATGAAAGTGCCAAACCAAAAGCAGGCAAAGTAAAACCCAATACAGAGAACAGTAATTCGTGCAAGATATGTGGCAAATGCTTTGCATCCCATAACGCCTTATCTACCCATACGGGATGGCATAAACGATTGAGCAACAAAATGGCAAGTTCGTCAACATCAAAAGtggaaaaaagacaaaaaatatttgaaaaactctaCACTCCCACATCTAAGAAGGAGCCAATCGACTTTCCAGAATACCAATGTTCCACTTGTTTAGTAGAATTACCTAATGACACCGCCCTTCAAATACACATGTTAGAAAAACACGGAGACCTTGATTCGAGTATGCTAGTGCCGAGATGTGATATTTGCAATCAAGATTTCACCTCCGAAGACGAGTATGAAAAACATAAACGTTTCCACGAATTTTTAGAACGTCAAAAGAGACACGACCAAGAAATGCGAACACCAATCATACAACACGTTCAAAGTGTTTTTGAAGGGGCAGAAAATGGATCGAAAAGATTTCCATGTGATTGGTGCAGTTCTGCATTTAGTAGACAGGACACTTTGAACACTCACATTAAGCATTATCATAAGGAACACATGAAAACGGAGTTTCCTTGTACATTCTGCAGGCGAGTATTTAACAAACAGAGTTCCTTAACAAGGCATTTGATTATTCATCAACGACCCGATGTTGACAGTGGTTCTTCTGTTGGCACTACATCGCAAAGTGGTGCCAAAGTTTACGTTTGTTCCTTGTGTAACATGTCGTTTAATTATCCTAAAGATTTGAGAACACATACTATTAATGCGCATCCATTTTAA
- Protein Sequence
- MMDIESSTTSRPMDVQAVCRLCLSERTDALKSLFDDELGPNRLPQKIELLLQLKINKMDRITTLICNDCIIRLDTWFSYKKQCHKNQIKLNDWLNQSKPSGPEIQETVYNIKQEPITESESSLLPIKAEINYEDDEFNETVQLYQHNDDSTFMDDEDVDNMESEEDRRCPDCGKMFDSSRNRRRHESKMHAKKDRRCQMKEIKKPQDDRVDSSQTQLEQATLNDSKTREDTQLIESNTSVNSQACQDDEPPKLDPIGNHESEATEKHNDNDEKKIKFAAGLQLFQKDSSPIELQSLSKIELSYIEKCKAMVSMFHTFQCACHNVQHKTLRNLLSHLRETRIWFPLFTCYNCMISLTDRSTFNRHYSKCSRPLLESLTKLSNLRKRSELKPRLYQNYKCNRCKFMFSFHEDFCKHVEEDHVNDLITPFYCSCRFVFDNPEEYKAHCYTSCVLSYYCDICFITTSTIEEFIKHSQENHDSSEGFLLQQENNYVPRNHTIRHKEADDEANVLEGKRERRKSSKEPIMVQIYDNEIPSDSKDISTSAVKKMIEMDLGMEIGWSRSPASCPLCKKRYSSVSNMVRHYKTHIERKEIEIPKLENESENEDLYTCPDCGGVYPASKWKLHLQEKHSILKCTECDKQFNFQSELDQHRSVHLNLKVFRDSKTHAYKSTMVSPSIECDICNEVFATKEELKNHKSTHDAPNDDEPPVVLLENADRPYCETCERHFASDKSLKEHIINKHGSSFLKKKEYPKKCDLCDKVCTTGAAFKSHKRMHDRISMRQEEEQREKNEFPKKCEYCDQVCATGASLYLHTQMHERVTLGELKKKKKVEVIKPKEGDESYHTCNKCFKVFATKGRLKEHLKSHGIFNKGLKKGRKVLCDLCHIALDSPEELQQHKNEEHNEEDMLDIVYACNICDEICESKEQLAQHKTAHESKPKSNSKNFYCQYCKVHFESLNELTKHMHKQHDESAKPKAGKVKPNTENSNSCKICGKCFASHNALSTHTGWHKRLSNKMASSSTSKVEKRQKIFEKLYTPTSKKEPIDFPEYQCSTCLVELPNDTALQIHMLEKHGDLDSSMLVPRCDICNQDFTSEDEYEKHKRFHEFLERQKRHDQEMRTPIIQHVQSVFEGAENGSKRFPCDWCSSAFSRQDTLNTHIKHYHKEHMKTEFPCTFCRRVFNKQSSLTRHLIIHQRPDVDSGSSVGTTSQSGAKVYVCSLCNMSFNYPKDLRTHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -