Hham009791.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- zfh1
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000007.1:449291-454221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0026 0.22 12.0 0.1 2 23 76 97 75 97 0.90 2 20 0.032 2.7 8.6 0.4 1 11 131 141 131 153 0.89 3 20 1.6e-06 0.00014 22.1 1.8 1 23 159 181 159 181 0.98 4 20 0.00034 0.029 14.8 3.4 1 23 193 215 193 215 0.97 5 20 0.00025 0.021 15.2 0.2 3 21 224 242 223 243 0.93 6 20 0.027 2.3 8.8 0.7 1 23 358 380 358 380 0.92 7 20 0.00078 0.066 13.7 3.0 1 23 386 408 386 408 0.97 8 20 0.0031 0.27 11.7 0.5 1 23 416 438 416 438 0.90 9 20 6.3e-06 0.00053 20.2 1.9 1 23 444 466 444 466 0.98 10 20 0.00085 0.073 13.5 2.9 1 23 478 500 478 500 0.97 11 20 0.0051 0.43 11.1 0.2 3 23 508 528 507 528 0.98 12 20 0.00021 0.018 15.4 0.7 1 23 534 556 534 556 0.98 13 20 0.0014 0.12 12.8 0.2 2 23 638 659 637 659 0.90 14 20 0.0024 0.2 12.1 0.6 1 23 693 715 693 715 0.89 15 20 0.011 0.97 10.0 1.1 1 12 721 732 721 742 0.88 16 20 6.1e-05 0.0052 17.1 3.9 1 23 750 772 750 772 0.98 17 20 8.4 7.1e+02 1.0 0.1 3 15 783 792 782 800 0.70 18 20 6e-05 0.0051 17.1 0.8 1 23 806 828 806 828 0.98 19 20 0.016 1.3 9.6 4.3 1 23 834 856 834 856 0.99 20 20 0.11 9.2 6.9 1.0 1 22 862 883 862 883 0.95
Sequence Information
- Coding Sequence
- ATGCTGGCTGGgtCTTTAAATACCCCTATTCTTCATAAAGTTGTCTTTGTCCCAGGAGCCTTATTCATACCAATAAAGCAAATACCTGGTGCCAAAATTACTACGGCAAATGGCTCCTTTGAAGTTCGACAAGACTTCCAACcgtttacaataaaatgtaaggacataaatgaaaaagatcCAAAACCTCCACAGTCCATGCCTGCCGATTTAAAAGTGCGAATTGAGTGCgacatttgcaataaaatgttcaatagTAATGTAGACTATGCTTTGCACTCAATCGATCATTCAATTGATCGGAGATACCACTGTCACTTGTGTGATTCGAAACATCAATCGAAGTATCAATTAAAGCTCCACGTGAAAGCCCATGAAGGGACTACCAAGTTTAAATGTGAGATTTGCAATAAGGCTTTTACAGCGAAAATTATTGCCAAAGAACACAAGTATGTTCATACTGGTGAGAAACCGTTCCAATGCGAAGTGTGTGGCAAAAGGTTTACTTTTTCCTACTACTTGGTAAACCATCGCAAAATTCATGACCAATCTAAAGTGGAGGGTACAAAAACTAAGTTCGATTGCAAGATTTGCAGTAAGCAATATGAATCCCGCGGTGGATTTCGCCATCATATGAAAAGCCACGAAGGAGGTGATCAGTCTGTATTATGTGACATATGCGGAAAACGATTCAAGAATGTCAGCCTCTTGCGATATCATGAACAATCAGTGCcagttgaaatttatttctataggAACTGGGTATACTTGTTAGCATTGTTGAAGCGCCATCTGTTGGGTGGATatttaacgttatttttatttgacgtATCCCCGCCAGtgtcttttaaaattcccgGGCCGGTTGAGGAACCAATTCTGTTTAGATTCGTCTTCGGACCAAAACCCTCATTCATTCCAATAACTCGTATACCTTGCGCCGAAGGTACAACTAATAGCAGTTCCGCTGAAATCCAACAAAACTTCCAACCATTCACAATAAAACTTAAAGTTAGGAATGAAAAAGATTTGAAACATCCACGGCCCACACCTTCTATTTTAAAACCACAATTCAAATGCGATATTTGTAATCTAATTTTCCACAACAACATGGATTATGCTTTGCATTCAATCGAACATTCGATTGACCAGAGATACAACTGCCACTTGTGCGGTTCGAAATATCGATCGAGGTATCAATTGAGACTACATGTAAAAGCTCATGAAGGGACTACAAATACCAGGTTCAAATGTGAGATTTGTAATAAGACTTTTACGGGGACTACCATTGCGAAAGAACATATGAACATTCATACAGGTGAAAAGCCTTTCCAATGTGAAGTATGCGGAAAAAGATTTAACTTTACAAAGAGTTTGGTAAGACATCGCAAAGTTCATGAACAATCTAAAATGGATGGATCAAAACCTAAATTCGATTGTCAAATTTGCAAGAAGCAATATGAATCTCATAGTGGATTTCGTGATCATATAAAAAGCCATAAAGTTGATCCGTCAGTATTATGCGACATATGTGGGAAACGAATTGCGTCTAAGAAACGCCTGGCCGCTCATAAACAAGTACATTTAGGAGATAAGCAATTCTCCTGTGAAATTTGCTTAAAGAGATTTTTGAGAAAGAAAGAACTCGAAATGCATATACGAATACATACCGGTGAAAAGCCACATGCTTGCCTATTTTGTGaTATTCCCATTTTCTATAATGATGTGTTTGTCCCGGGAACCCTATACATCCCATTAATACGTATATCTTGCCCCGAAGTTACATCTACAAACGATTCCTCTATGATTCAAGAAGAGATTCAACCAATTATAACAAAGTTTAATGATACGAATAAAAAAGACTCGAGATCTCTACAATTTCAAGTGCCTGacgatataaaaatacaaatagaaTGCAACATTTGCAAGAAAACGTTCAACAGTAATGTGGACTATGCTTTGCACTCAATCGATCATTCAATTGATCGGAGATACCACTGTCACTTGTGTGATTCGAAATATCTATCGAAGTATAAAATGAAGTACCATGTGGAAGTCCATGAAGGGACTACCAAGTATAAATGTGAGATTTGCAATAAGGCTtttataacgaaaaaaattgccaaagaACACAAGAATGTTCATACTGGTAAGAAACCGTTCCAATGCAAAGTGTGTGGCAAAAGgtttacattttcattaatcTTGGCGGCACATTGCAAAGGGGTGCATACTACAAACCCTAGATACAAGTGCAAGATTTGCAATAAACAATACAAGAATCACAGTGGACTTATTAATCACAAGGAAAGGCACAAAGAAAGTTGGGCCGAAGAGATGAAAGCATGTGACATATGTGAGAAAGTAGTCGTAAATCTGAAGGGGCATAAACTAATTCATTTAGGACACAAGCCATTTTCCTGTGAAGTTTGCTCAAAGAGTTTTTTGAGAAAGGAACAGGTTAAAATACATATGCGAATACATACCGGGGAAAAACCGtatgtatgcaaattttgCAGTAAAAGATGCAATCAACAAACAATCTTAAAAGTCCACGAGCGCACCCATACTGGCGAAAGACCTTTCTCTTGTAGCCGATgtcagtttaaatttatttccaaagcAGGTATGGATTATCATATGAAGCGATGCAAGAAAATAacttag
- Protein Sequence
- MLAGSLNTPILHKVVFVPGALFIPIKQIPGAKITTANGSFEVRQDFQPFTIKCKDINEKDPKPPQSMPADLKVRIECDICNKMFNSNVDYALHSIDHSIDRRYHCHLCDSKHQSKYQLKLHVKAHEGTTKFKCEICNKAFTAKIIAKEHKYVHTGEKPFQCEVCGKRFTFSYYLVNHRKIHDQSKVEGTKTKFDCKICSKQYESRGGFRHHMKSHEGGDQSVLCDICGKRFKNVSLLRYHEQSVPVEIYFYRNWVYLLALLKRHLLGGYLTLFLFDVSPPVSFKIPGPVEEPILFRFVFGPKPSFIPITRIPCAEGTTNSSSAEIQQNFQPFTIKLKVRNEKDLKHPRPTPSILKPQFKCDICNLIFHNNMDYALHSIEHSIDQRYNCHLCGSKYRSRYQLRLHVKAHEGTTNTRFKCEICNKTFTGTTIAKEHMNIHTGEKPFQCEVCGKRFNFTKSLVRHRKVHEQSKMDGSKPKFDCQICKKQYESHSGFRDHIKSHKVDPSVLCDICGKRIASKKRLAAHKQVHLGDKQFSCEICLKRFLRKKELEMHIRIHTGEKPHACLFCDIPIFYNDVFVPGTLYIPLIRISCPEVTSTNDSSMIQEEIQPIITKFNDTNKKDSRSLQFQVPDDIKIQIECNICKKTFNSNVDYALHSIDHSIDRRYHCHLCDSKYLSKYKMKYHVEVHEGTTKYKCEICNKAFITKKIAKEHKNVHTGKKPFQCKVCGKRFTFSLILAAHCKGVHTTNPRYKCKICNKQYKNHSGLINHKERHKESWAEEMKACDICEKVVVNLKGHKLIHLGHKPFSCEVCSKSFLRKEQVKIHMRIHTGEKPYVCKFCSKRCNQQTILKVHERTHTGERPFSCSRCQFKFISKAGMDYHMKRCKKIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -