Basic Information

Insect: Hypothenemus hampei
Gene Symbol: -
Assembly: GCA_013372445.1
Location: JABRWK010000031.1:156010-160484[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.2e-05 0.0019 18.5 0.7 1 23 166 188 166 188 0.95

2 15 0.00061 0.052 14.0 0.3 3 23 196 216 195 216 0.99

3 15 7.6e-05 0.0064 16.8 0.2 1 23 317 339 317 339 0.98

4 15 0.0069 0.59 10.7 0.2 1 23 345 368 345 368 0.97

5 15 7.2e-07 6.1e-05 23.2 4.0 1 23 393 415 393 415 0.98

6 15 0.0036 0.3 11.6 0.0 1 23 428 450 428 450 0.94

7 15 0.021 1.8 9.2 0.1 1 23 456 479 456 479 0.94

8 15 0.014 1.2 9.7 2.6 1 19 485 503 485 504 0.96

9 15 0.00035 0.03 14.7 4.7 3 23 515 535 513 535 0.98

10 15 0.0031 0.26 11.8 0.2 2 23 541 562 540 562 0.96

11 15 1.9e-06 0.00016 21.9 0.4 1 23 570 592 570 592 0.98

12 15 0.0029 0.25 11.9 0.2 3 23 600 620 598 620 0.97

13 15 0.00012 0.01 16.2 0.3 1 23 626 648 626 649 0.95

14 15 0.11 9.4 6.9 1.2 1 23 663 685 663 685 0.96

15 15 8.7e-05 0.0074 16.7 0.0 1 20 1067 1086 1067 1089 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.2e-05	0.0019	18.5	0.7	1	23	166	188	166	188	0.95
2	15	0.00061	0.052	14.0	0.3	3	23	196	216	195	216	0.99
3	15	7.6e-05	0.0064	16.8	0.2	1	23	317	339	317	339	0.98
4	15	0.0069	0.59	10.7	0.2	1	23	345	368	345	368	0.97
5	15	7.2e-07	6.1e-05	23.2	4.0	1	23	393	415	393	415	0.98
6	15	0.0036	0.3	11.6	0.0	1	23	428	450	428	450	0.94
7	15	0.021	1.8	9.2	0.1	1	23	456	479	456	479	0.94
8	15	0.014	1.2	9.7	2.6	1	19	485	503	485	504	0.96
9	15	0.00035	0.03	14.7	4.7	3	23	515	535	513	535	0.98
10	15	0.0031	0.26	11.8	0.2	2	23	541	562	540	562	0.96
11	15	1.9e-06	0.00016	21.9	0.4	1	23	570	592	570	592	0.98
12	15	0.0029	0.25	11.9	0.2	3	23	600	620	598	620	0.97
13	15	0.00012	0.01	16.2	0.3	1	23	626	648	626	649	0.95
14	15	0.11	9.4	6.9	1.2	1	23	663	685	663	685	0.96
15	15	8.7e-05	0.0074	16.7	0.0	1	20	1067	1086	1067	1089	0.94

Sequence Information

Coding Sequence: ATGGAGAACGCAGAGTTTAATTTGACTTGGGAGGACGCGACTACGGTGGTCCAATCGGAGGAAGTTATTACCAGTatggaaaatgaaataattcaagaACAATCTGAAGAGTTCATTACCGAGGTGCAAGATGAATTTGTTGATGATGTAGTAACTGAGGAATTGGTTGAGGAGGTTGGAGTTGTAGAGGAAGAGGTGGTTGATAATTCTGGAGTGTCACAGGATGTTTCTTTGGAAGAACAGCAAGAAGAATCTGGTCTTGTATATTTATCAGATGGAAATGTTTTGGTAATGCATGATGAAAACCAAGAAACTTTTACTCAAGATCAGTTAATGACGGTCACTGAAGAAGTAATAACAGATCAGTGGGATGAAAATTGTCCAGAAGAAATTATCGTAGGCTCTGAAGAAGCGATTAGTGCAACTGGTAGTCAACCATTGGAAGATGATATACCATTGCCTACTGATCAAGATGAATATACTGCAGCTAGACCATATCCATGTGATTTTTGCAGCAGAAGATTTCGTAAAAAGGCCAATTTAATGAACCATATGGTGGCACATCAAACTGATCGACCTCATGGATGTAACTTATGCGGAGTCAGATATATGAGAAAAGCCGATTTGATGAACCATCTTAAAAGTCACGCTTTTATACCAGACACTCAACAAATTGAAGaagaagaaaatgcaTTGGACGATCACAGCTTTGCTACTGACAAACCTAGAAGAAAAGCAAAAGCGTATGGCAAAAGAAAGGCGAAAAGATCAATTAAGGAAGAATATGATAATATGTTCACTACAGGGGGTGCAGGATCTTCAAGTACTCACTATGTCTATCaggaagaagaaataaaatatatcgataATGATGTTGAGAATAATGCAGGTTATCTTTCGTCGTCACAGGAAGATTCCAAATATCCAGTCACCGATCCACGAAAGCCATTCGTTTGCCAGCATTGCGGTGTTGCGTTTGCAAGAGAAAAAGCTCTTGCCTCTCATTCTAGAATTCACGGAGGCGACAGTCCTTTCGAGTGTCAGAAATGTGGAGAAATGTTTTGGGATATTTCTCTAATGCAGGAACACGCTAGAACCAAACATGGTGGATTAGAAGACTTCGACGATGATGAAGATGACGACTATTCCGATTCCGAAGAAACAAAATACGGAACTTTCTACTGCACTACTTGTGGTCTATCATTTCATCGACAAGACAATTTAAGAAGGCATCAAAGAATACACATCAAAGAAGAATATGTCAACGAACATGAATTGGGACATATTTGTAACGTTTGTGGTGAATCATTTCcggaAGCTCTCGACTTATTAGCTCATGCAGAAATCCACGCACGAGGAGCCGAATATCGTTGCATGTTATGTGGTGAAATTTGTATAGACGAAAATACTCTAGCCAATCACGTGCAGGGAGAACACAAGAATTTACCTCCACACACATGCGCGTTGTGCGGACGCACTTGTAAGGATAGTAGAACATTGTTAAAACATTCATGGGAACATTCAAAGGAAAAGACTTTCGGATGTACAAAGTGCTCGAaaacttttcataataaaGCCCGTCTTAAGCGCCATATGCTCTCTCATAGaaacaaGGTTGTGCCGTGTAACGTATGCGGAGAAGATTTTCCAGACGGAAGAAGCTTGATGAATCATCGGCATAGCCATAGTAGCGTGTCCGGTAGACAATTTCCTTGCAAAGAATGCGGAAAGACTTTTGGATCCAGAAGTTCACAACAAATTCATATTCGGATTCATACAGgtgagAGGCCATATGGTTGTCGGTTTTGTTGGAAGGCCTTTGCCGACGGAGGAACTTTGCGTAAACACGAGCGGGTCCACACGGGTGAAAAGCCATATGCTTGCGTGGTTTGTCCAAGGGCTTTCAACCAAAGAGTGGTTCTTAGAGAACATATCAGGTCTCATCATTCCGGTCCAGATCCGAAATATTCTCACAGTATGACACCCTACTGTTGCGCAGTGTGTTCAGATATGTTTGCCACATCACAAGATTTgattcttcatttaattcatCATTGCGATTTGAACACCGCAATGAAACGACAACCACAAGTGGGACCTCGCAAATATAAGCGGAGAAGGAAACTTAAACCGCATGAATTGGATTCTCTAGCGGCTAATAATCAAATAGATAGAGAAAGGTATTCTTCAAGAAATGATGATATTGTTGAGCAAGACCTTACGGACACAATTTCGGAAGATGAGAGGGAGTTGCCCAGAAGATCTAGAAGGACTTTGTCGAGGAAAGCGTCAAGCTCTTCACCAAAAACTAGtttGAGCGAGTCAATGTCTGACATTTACAATAGTTTTCACACTATTGAAAACACCGATTCTATGGCCGTGCCGAAGTCGCCAAACTCAAAGGCGaaactttccaaaaaaattaagagcgAAAATGCATCTGTTCCATCGCGACCCAAGATGATTCACACTCAAAAGACTAGGGTTGCGGTAGAAACTGGGGAGGATGGACGAGTCAGACACAGAACTCGAACTTTGGTAACGAGAACACAACCGGCCGAAATTAAATCTGCCACAGGAGAGAGGATTCGGCCCAGAACGAAAAATGTTAGTTATCATGTATTGAATCCGGAAAAATTGCCATTAGCAACGTTCCCAAATGCTGATCAAACTCAGGAAGCCgttgataatttattaaaagaaacagGAGGTGAAACAACTAATGGTGATGTTATAAGTGAACagattGTAGAACCTACCCCTGAAGTAGCTCGAGAACAAACTGTAGAAAGTGAAATAGCCGTTCCAATTGGAATTGTTGAAGTTAGAACAAGGAGAAATAGTGCTCGCATTTCCAGGAATGTAATCGGACCTGgCAGTAAGGTAAGATTGGTTAAGGAAGGAATGGTAGTCTCCAAGGTAAAAAGGAATAGCGAATCCCAAAACGAGCCCGAATCTATTTTACCAGATATTCAAGAAACTGagcaaatttatattaaagaagAGCTATTACACTctACGCAACatgaagattttattgaatCCAATGAaggaaatcaaaataattccAGTTATGATGGTCAAGAAGAATTTCCGGAAAAAAGCTCTTACAAAGTGAAGCAAGAGGTGCCAGATCCGAGTGCTCTTCACGAGTTGGCCGAAATCTCAATGCGTCACGCAAGCAACGTTACAACTATGTTCAAATGTGAAATGTGCGATGAGGTATTCAGTGATCGGGCTCAACTTCTCGTTCACGTACCAGTTCACATTTGA
Protein Sequence: MENAEFNLTWEDATTVVQSEEVITSMENEIIQEQSEEFITEVQDEFVDDVVTEELVEEVGVVEEEVVDNSGVSQDVSLEEQQEESGLVYLSDGNVLVMHDENQETFTQDQLMTVTEEVITDQWDENCPEEIIVGSEEAISATGSQPLEDDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYMRKADLMNHLKSHAFIPDTQQIEEEENALDDHSFATDKPRRKAKAYGKRKAKRSIKEEYDNMFTTGGAGSSSTHYVYQEEEIKYIDNDVENNAGYLSSSQEDSKYPVTDPRKPFVCQHCGVAFAREKALASHSRIHGGDSPFECQKCGEMFWDISLMQEHARTKHGGLEDFDDDEDDDYSDSEETKYGTFYCTTCGLSFHRQDNLRRHQRIHIKEEYVNEHELGHICNVCGESFPEALDLLAHAEIHARGAEYRCMLCGEICIDENTLANHVQGEHKNLPPHTCALCGRTCKDSRTLLKHSWEHSKEKTFGCTKCSKTFHNKARLKRHMLSHRNKVVPCNVCGEDFPDGRSLMNHRHSHSSVSGRQFPCKECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERVHTGEKPYACVVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCAVCSDMFATSQDLILHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHELDSLAANNQIDRERYSSRNDDIVEQDLTDTISEDERELPRRSRRTLSRKASSSSPKTSLSESMSDIYNSFHTIENTDSMAVPKSPNSKAKLSKKIKSENASVPSRPKMIHTQKTRVAVETGEDGRVRHRTRTLVTRTQPAEIKSATGERIRPRTKNVSYHVLNPEKLPLATFPNADQTQEAVDNLLKETGGETTNGDVISEQIVEPTPEVAREQTVESEIAVPIGIVEVRTRRNSARISRNVIGPGSKVRLVKEGMVVSKVKRNSESQNEPESILPDIQETEQIYIKEELLHSTQHEDFIESNEGNQNNSSYDGQEEFPEKSSYKVKQEVPDPSALHELAEISMRHASNVTTMFKCEMCDEVFSDRAQLLVHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -