Hham009734.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- -
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000007.1:420542-427300[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00034 0.028 14.8 0.7 2 23 77 98 76 98 0.95 2 28 0.00034 0.029 14.8 0.3 1 23 118 140 118 140 0.98 3 28 0.53 45 4.7 2.4 1 23 144 167 144 167 0.97 4 28 0.0041 0.34 11.4 0.4 1 23 173 197 173 197 0.97 5 28 0.0083 0.71 10.4 4.6 1 23 203 225 203 225 0.97 6 28 0.15 13 6.4 0.1 1 23 231 254 231 254 0.91 7 28 0.05 4.3 8.0 0.3 2 23 266 288 265 288 0.94 8 28 0.0011 0.09 13.2 0.5 3 23 301 321 299 321 0.96 9 28 0.0013 0.11 13.0 1.2 3 23 389 410 388 410 0.94 10 28 1.2e-05 0.001 19.4 2.6 2 23 486 507 485 507 0.97 11 28 0.26 22 5.7 0.1 3 23 568 589 568 589 0.97 12 28 0.5 43 4.8 2.5 1 23 595 617 595 617 0.76 13 28 0.0016 0.13 12.7 1.6 1 23 623 646 623 646 0.95 14 28 0.00014 0.012 16.0 0.5 2 23 658 680 657 680 0.93 15 28 0.025 2.1 8.9 0.1 3 17 692 706 690 707 0.90 16 28 0.012 1 9.9 0.7 2 23 767 788 766 788 0.90 17 28 0.43 36 5.0 2.5 2 23 826 847 825 847 0.95 18 28 1.1 95 3.7 1.4 3 23 855 876 854 876 0.95 19 28 4.2e-05 0.0036 17.6 1.9 2 23 910 931 909 931 0.96 20 28 0.068 5.7 7.6 0.1 1 23 949 971 949 971 0.97 21 28 0.047 4 8.1 0.4 1 23 973 995 973 995 0.96 22 28 0.0061 0.51 10.9 0.1 2 23 1035 1057 1034 1057 0.97 23 28 0.012 1 9.9 0.6 1 23 1063 1086 1063 1086 0.94 24 28 0.00044 0.038 14.4 0.3 2 21 1098 1117 1098 1118 0.93 25 28 0.0002 0.017 15.5 1.6 1 23 1133 1155 1133 1155 0.97 26 28 0.011 0.89 10.1 0.9 1 23 1161 1183 1161 1183 0.85 27 28 3.6e-06 0.00031 21.0 2.1 1 23 1189 1211 1189 1211 0.96 28 28 0.0042 0.36 11.3 0.2 2 21 1220 1239 1219 1240 0.94
Sequence Information
- Coding Sequence
- ATGATATTAAGGAAAAGTTCCAGAAAACCGCCACGAGTGGCAGAATATCTGGATGTCGTTTTCAAACAATCCGATGACGATGAAGATGACCCAAGGAATATTAAAAGCGAAAGTGGTCCAAACAAATCATCTACCTATAAAAAGTGTCGTATGGATTAtgatagaaaacaaaatttgcacAAAGACGAAGATTGTTTAAACGAATTTAAAGATGTGAGAACTTCGTTGAGTTGCAAAAAATGTCCTCTTGTATTCCGCTCAATTAAAGAACTGAAAGCGCATAGAAAAGATCATACTAGAAGAGAGTTTATTGAGAAACACACGTACTATTTCGATGATATGCaggaaatttacatttgcaATACTTGTTCTGCCGAATTTAAGGATCAACAAGAAGTGGAAAAGCATATAAAATCTCATGAAGAAGTATTCGAATGTTCGCTGTGTTGTGAAAAGTTCCAGACTCTTTTTCTGCTGGGAAATCACATGAAAGTAACGCACAGCGAAGATGACCAGTTCACTTGTCCTCTTTGTCCGGACCAAAAGTTCCCTAAACCATCGTTATTCACTAAACATATAGATACGAAACATCAAAAACGATACATGTACAATTGCAAAGAGTGCGGTAAAGGGTTCCACAGTAGAACACTCTGCAGGGAACATATGAACGTTCATTTAGGAATCAAACCCTTTAACTGTATAGTTTGTGGCGCTGGTTTTACCTACTCAAAATCGGTAGTGACGCATCAATTGAAAGCACATCGCGTGGAAATTTTAGGCAAGAGTCACACTACAGAATGCCAATTCTGCAGGAATCGTTTCGTTTCTGTCGCCTCTCTCGAAAGACATGTGCAACAAGTCCATTCCACTCCCAAACCGCCTAAAGAGAAGATTCATTTGTGCGACATTTGCGGTATGGGATTcgccaaaaaaaacaaaatggtcGTGCATCAGAGAGTACATACAGGTGTCAAACCaCTGAACAATGATGGAGCcattaaagaagaaatagaTATTAATGAGGAACCCTTGCATCAACCATGCGAAGACCGTTTGTCGAACAAATCTGAAGAGCAAATAAGTGATACGAAACTGGAAATCATCAATTGGCATTCATTTCCTTTGACAGTTCGTTCTAAAAAGAAACCGTTAAGGAAACGAGACTGTcgttattgtaaaaaaacttttgattcGATTAAGAATCTTACCATGCATGTAAACCTTAATCATGACAAACGCCTTTTGTCTAGCAATAAgcgaaaaagaagaaatccGACAAAGTACTTAAGAAACCATGAGGACAATTCGTTCCTATATGGCTCCAAGAAGTCGTTTCATAGTCCAGATCAATTAACTTTAAACTGTGAGATTAAATCGGAGAGTGATCAAGAAGATATCACATCTTCACGACGCAAGAGtcttaggaaaaaaataaaagtagaGGGGAACCGTTGGGAGTGTAAAAAGTGTCCAGAAAAATTTTCGACATTTTCTCACTTAAAAGCGCACAGAAAAATTCATAGTAATAAAGAACAACCTGAAGATCACACATACAAaatttcaaaaagaagaagaggtAAAGAGACACATGAAAGACCTACACGACAAAGAATATTCTTGCAATCAGtgctcaaaaattttaaaactttatatgaAATGGGAGTGCATGCCAGCGAACACAATCCCAACGGCCTAGTCGGTTGCCCTTTATGTCAATTTAAGAGTCCCAAGAAAGGAGCTTTATTGATACATATTAACTATGtacatttgaagaaatttgcaCACTTTTGCGATAAATGTGGCAAGGGCTTCAACgaccatttaattttcaaggaACACGCCAACGAACATTTAGGGATACGCCCATTTGAATGTGTTGTTTGTGAAAAATCCTTTACATATACCAgGTATCTTTATACTCACCAGGTACGTACCCATCGAGTAACTATTGATGGGCAACTCCTTCCCAATCAGTGTCCTTATTGCAGTCGCAAATATAGCAAATCGGAAACGTTAGAAAAACACTTGGAGGAAGCACACTTCAAAATGGGGCCACACGAAAAGAAACATCTTTGCGACACTTGTGGCAAAGGCTTTGCCCAAAGAAGCAAACTGATTTCTTGCATTGAAAACCCTGAAGAAGTTCTTCCTTACTTCACTGAAAAAGTCTTTCGACTATTGCAATGTCAACAAATGAAGAACCTCTACAgagttttgtttttcaaaagattaactgtattattttttaggaaaaagcGTCGTAAAGGCCGTCCAAGAAAACCGCAATCCGACCACCTACCATGCTTGAAATGTCCTAAAACTTTTACATCTCAAAAACTTGCCAACCTTCATAAGTACCTTCATGTGGACGAGTCCTCATTCAAATCTCATGAAGATGgatttagttgtatcttcTGCTCTACCAAATATCCAGAtaagaaatcaattaaaagtCATATGAATTGTCATTCCATGAGTTGCACCAAGTGCCACGTTCACTTCCAAAATCCATTCTTTTTGGGATTGCATATGGCCGAACATGATTCTGAATCAAAAGTATTTTGTCCGTTATGCAATTTTAGTGGAAAACTTGTTCTGGCCCTTAAAAAGCATATTTGTACCACGCATTTTGGAAATAAGCTAACTGATGATGAACTGGAAGAAGAATCCGAAGATGATAAACCGTTGGAGAAACGTCTTAGGCGTACTGCTGCTAAAACTTATTTGATGTGTAAAGTTTGTGAAAAGtcttttaaaaacatgaaagACTTAAGAAATCACAAGAAAGTACACAAAGCGGAGCGTTTGGAGTCTCTTTACACCTACAATTCTTTAAGAAAGACATTCTCTTGCGACACTTGTCTTCAAGAATTCATATCAGAAGAGGAGGTAATCAAACATGTGGAATCTCACTCGTATACTTGCACTTTTTGTTcggtaaaattcaaaaaagctCTTCTTCTCGGTTTACACATGGCTGAGCACAACGAAGATGGTTCTATCAGTTGTCCCATGTGTAATCACGAGTTTAAGACACGATGCAAGAGCCGTCTAATGAGACACATTAGACAAACTCATCACAAAGAGCGACCCAAAACGAGTCAATGCGAATACTGTGGCTCGTCTTATTTATCTAAAACCATGCTTGAGGATCATATTCGAGTGGTGCACCTCCAAAAGGAGCCTTACAAGTGCATAGTGTGTGGAAACACTTTCACTTTACAATCGAGTATGCGCAttcatcaaattaataaacaccGAGTGGTAGATGAAAGCGAATTATCTTCGAATTATTGCACTTTATgcaaaatgtcttttaaaaaaccttcTTCTTTAGCTAAACACTTGGAAATGAAGAGATGCATTCCCACTCCGAGAGTGGAGCGTCAAGGACACTTTGTCTGCGACTTGTGCGGTAAAGAATTTCGATTCTATAAGACATTCAACCTCCATTTAAGAGATCATGCCGGTGATAAACCGTTTAAGTGTTCTTACTGTCCTAAGAGTTTTGTGATCAACTCTAAAAGGCTGATGCACGAGGTGTCGCATACAGACCTACGACCATTTTCGTGTGAAACTTGTGGACAAAGTTATAAAACTTGGAAACATCTTCGTAGGCACCTGGTAATTCATGGAACGAACCCCAAAGTGACTCTAAATTGTGCATTTTGCGGCAAAGAGTTTGGCACAAAAGATGCTCAAAGATCACATATGAGACTATGTACCAGACCTCCAAAGCCTTCAGAGTGTTATATATAA
- Protein Sequence
- MILRKSSRKPPRVAEYLDVVFKQSDDDEDDPRNIKSESGPNKSSTYKKCRMDYDRKQNLHKDEDCLNEFKDVRTSLSCKKCPLVFRSIKELKAHRKDHTRREFIEKHTYYFDDMQEIYICNTCSAEFKDQQEVEKHIKSHEEVFECSLCCEKFQTLFLLGNHMKVTHSEDDQFTCPLCPDQKFPKPSLFTKHIDTKHQKRYMYNCKECGKGFHSRTLCREHMNVHLGIKPFNCIVCGAGFTYSKSVVTHQLKAHRVEILGKSHTTECQFCRNRFVSVASLERHVQQVHSTPKPPKEKIHLCDICGMGFAKKNKMVVHQRVHTGVKPLNNDGAIKEEIDINEEPLHQPCEDRLSNKSEEQISDTKLEIINWHSFPLTVRSKKKPLRKRDCRYCKKTFDSIKNLTMHVNLNHDKRLLSSNKRKRRNPTKYLRNHEDNSFLYGSKKSFHSPDQLTLNCEIKSESDQEDITSSRRKSLRKKIKVEGNRWECKKCPEKFSTFSHLKAHRKIHSNKEQPEDHTYKISKRRRGKETHERPTRQRIFLQSVLKNFKTLYEMGVHASEHNPNGLVGCPLCQFKSPKKGALLIHINYVHLKKFAHFCDKCGKGFNDHLIFKEHANEHLGIRPFECVVCEKSFTYTRYLYTHQVRTHRVTIDGQLLPNQCPYCSRKYSKSETLEKHLEEAHFKMGPHEKKHLCDTCGKGFAQRSKLISCIENPEEVLPYFTEKVFRLLQCQQMKNLYRVLFFKRLTVLFFRKKRRKGRPRKPQSDHLPCLKCPKTFTSQKLANLHKYLHVDESSFKSHEDGFSCIFCSTKYPDKKSIKSHMNCHSMSCTKCHVHFQNPFFLGLHMAEHDSESKVFCPLCNFSGKLVLALKKHICTTHFGNKLTDDELEEESEDDKPLEKRLRRTAAKTYLMCKVCEKSFKNMKDLRNHKKVHKAERLESLYTYNSLRKTFSCDTCLQEFISEEEVIKHVESHSYTCTFCSVKFKKALLLGLHMAEHNEDGSISCPMCNHEFKTRCKSRLMRHIRQTHHKERPKTSQCEYCGSSYLSKTMLEDHIRVVHLQKEPYKCIVCGNTFTLQSSMRIHQINKHRVVDESELSSNYCTLCKMSFKKPSSLAKHLEMKRCIPTPRVERQGHFVCDLCGKEFRFYKTFNLHLRDHAGDKPFKCSYCPKSFVINSKRLMHEVSHTDLRPFSCETCGQSYKTWKHLRRHLVIHGTNPKVTLNCAFCGKEFGTKDAQRSHMRLCTRPPKPSECYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -